BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355933

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40500.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   490    4e-138


> AT5G40500.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16227834-16228693 
FORWARD LENGTH=697
Length=697

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 295/309 (95%), Gaps = 3/309 (1%)
 Strand=Plus/Plus

Query  40   GTAGGAGGGAGGTTGGAGATAAATTGCAGAAAGAAAGAGAAAGGAAGAGATCAGAGTAAT  99
            |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  217  GTAGGATGGAGGTTGCAGATAAATTGCAGAAAGAAAGAGAAAGGAAGAGATCAGAGTCAT  276

Query  100  TATCCTCCTTACAAAGTTATTGAAATCACTCCTCCTCCTAAATCTCTCGGCATTCGTTGC  159
            ||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  TA---TCCTTACAAAGTCATTGAAATCACTCCTCCTCCTAAATCTCTCGGCATTCGTTGC  333

Query  160  CTTCCTCATAACCTTCAATGTGGAGAGAATGTTATGATCGAAGGGCAAACGTACACAATC  219
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  334  CTTCCTCATAACCTTCAATGTGGAGAGAACGTGATGATCGAAGGGCAAACGTACACAATC  393

Query  220  TCCGCGGTGACTCACCGGTATCAGCTCCGGAAAGGCAAATACGAGCCGAGTGAGAGGCGG  279
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  394  TCTGCTGTGACTCACCGGTATCAGCTCCGGAAAGGCAAATACGAGCCGAGTGAGAGGCGG  453

Query  280  CTCGATGTTCTCTCTGCCGCTAGATACGTTTTAAACCTTTACTTCGACAATTTACTCCAA  339
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  454  CTCGATGTTCTCTCTGCTGCTAGATACGTTTTAAACCTTTACTTCGACAATTTGCTCCAA  513

Query  340  AACTCTTGA  348
            ||||| |||
Sbjct  514  AACTCCTGA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5