BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355983
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 564 1e-159
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 361 2e-98
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 322 7e-87
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 252 9e-66
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fa... 230 4e-59
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 564 bits (305), Expect = 1e-159
Identities = 622/767 (81%), Gaps = 54/767 (7%)
Strand=Plus/Plus
Query 796 GAACATGATGA-AACTCCAG-ATTATGTTGAGGCGGTTGCCAT-AGCGAAAAAGACACTC 852
||| |||| || | |||| | ||| ||||||||| |||| | | || ||||||||| |||
Sbjct 1313 GAAGATGA-GACACCTCCTGAATT-TGTTGAGGCAGTTGGCGTAAG-GAAAAAGACGCTC 1369
Query 853 TTTGTTTCCGGTCTCTCTCCCCAAACTGATATATCAG-ATATCATCAATTTCTTCAAAGA 911
|||||| || |||||| | | ||||||| ||| | | ||||||| ||||||||||||||
Sbjct 1370 TTTGTTGCCCATCTCTCACGCAAAACTGAAATAAC-GCATATCATAAATTTCTTCAAAGA 1428
Query 912 TGTCGGAGAAGTCGTTCATGTTCAACTTACTT-TAAACAACAAAGGCAGGCATGTGGGCT 970
||| |||||||| |||||||||| |||| || ||||| ||| ||||| |||||||||||
Sbjct 1429 TGTTGGAGAAGTTGTTCATGTTCGGCTTA-TTCTAAACCACACAGGCAAGCATGTGGGCT 1487
Query 971 ATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAGAAGAGAAGGTGAGAGTAGTTTATAGTA 1030
|| |||||| ||||||| ||||||| | | |||| || ||| | | | | | |
Sbjct 1488 GTGCCTTTGTAGAGTTTGGTTCTGCT-A--ACGAAG-CAA----AGA-TGGCGT-T-GGA 1536
Query 1031 ATGATGAAAATAGGCAAGTAGTTATATTAAAGCGCTGGAATCATGATCGCAAGATTGTTC 1090
| | ||||| | | || | ||||| | ||| | ||| |||||||| |||
Sbjct 1537 A--ACGAAAA-A--C-GGT-G-AATATT-------T-GAA-C--GATTGCAAGATTTTTC 1577
Query 1091 GTCG-AGTGG-T-TGA-CGCTCCATACCGTCCACCCAAGTATTGCGTAGATCACAAGGTT 1146
| | ||||| | || | |||||||| |||||||||||||||| || |||||||||||
Sbjct 1578 -TTGAAGTGGCTAAGATGGTTCCATACCCTCCACCCAAGTATTGCATACATCACAAGGTT 1636
Query 1147 TGGTACGATGACTACCTTCGACGAGAAGGCCTTCTTATGGAAGAAAATGAGGCAGTGAAA 1206
|||||||| |||||||||||||||||| ||||||| || |||||||||||| ||| | ||
Sbjct 1637 TGGTACGAAGACTACCTTCGACGAGAAAGCCTTCTGATAGAAGAAAATGAGACAGAGGAA 1696
Query 1207 GGACTTTATGAAACTCCTGATTTTGTTGAGCCATTTGCCGTAACAAAAAAGACGCTCTTT 1266
|||||| |||| ||||| | | |||||||| ||||||||||| ||||||||||||||||
Sbjct 1697 GGACTTGATGACACTCCCGCTCTTGTTGAGGAATTTGCCGTAAGAAAAAAGACGCTCTTT 1756
Query 1267 GCTT-CCAATCTCTCTCACC-TAACTAAAATATCAGATATTATC-AGTTTCTTCAAAGAT 1323
| || |||||||||| | || ||||||||||||| |||| ||| ||||| || ||||||
Sbjct 1757 G-TTGCCAATCTCTCAC-CCAGAACTAAAATATCACATATCATCAAGTTT-TTTAAAGAT 1813
Query 1324 GTTGGAGAAGTTGTTCGTGTTCGACTTATTGTAGACCACATGGGTAAGCCTGTGGGCTGT 1383
|||| |||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||
Sbjct 1814 GTTGCAGAAGTTGTTCGTGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGGGCTGT 1873
Query 1384 GGCTTTATTGAGTTTGCTTCTGCTGAA-GAAGCAGAGAAGGCGCTGGAAAAGAAGAATGG 1442
|||||| ||||||||||||||| | || |||||| ||||||||||| |||||| ||||||
Sbjct 1874 GGCTTTGTTGAGTTTGCTTCTGTT-AACGAAGCACAGAAGGCGCTGCAAAAGATGAATGG 1932
Query 1443 TGAACGTTTGCGCTTTAGTAAGATTTGTCTTGACATGGCTGAGATAGCTCCATACCCTCT 1502
|||| ||||||| | || |||||| ||||||| ||| |||| ||||||||||||||||
Sbjct 1933 TGAAAATTTGCGCAGTCGTGAGATTTTTCTTGACGTGGTTGAGTTAGCTCCATACCCTCT 1992
Query 1503 CCGACTCAAGTACAACCTTGCAGAGAAGCTTTGGTATGAA-GACAAA 1548
||||| ||||||||||| ||||||||| |||||| | ||| || |||
Sbjct 1993 CCGACCCAAGTACAACCATGCAGAGAAACTTTGGCACGAACGAGAAA 2039
Score = 233 bits (126), Expect = 3e-60
Identities = 281/354 (79%), Gaps = 17/354 (5%)
Strand=Plus/Plus
Query 1220 CTCCTGATTTTGTTGAGCCATTTGCCGTAACAAAAAAGACGCTCTTTGCTT-CCAATCTC 1278
||||||| ||||||||| || ||| ||||| |||||||||||||||| || || |||||
Sbjct 1326 CTCCTGAATTTGTTGAGGCAGTTGGCGTAAGGAAAAAGACGCTCTTTG-TTGCCCATCTC 1384
Query 1279 TCTCACCTAACTAAAATATCAG-ATATTATCAGTTTCTTCAAAGATGTTGGAGAAGTTGT 1337
|| | | |||| ||||| | | |||| || | |||||||||||||||||||||||||||
Sbjct 1385 TCACGCAAAACTGAAATAAC-GCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTGT 1443
Query 1338 TCGTGTTCGACTTATTGTAGACCACATGGGTAAGCCTGTGGGCTGTGGCTTTATTGAGTT 1397
|| |||||| |||||| || |||||| || |||| ||||||||||| |||| | |||||
Sbjct 1444 TCATGTTCGGCTTATTCTAAACCACACAGGCAAGCATGTGGGCTGTGCCTTTGTAGAGTT 1503
Query 1398 TGCTTCTGCTGAA-GAAGCAGAGAAGGCGCTGGAAAAGAAGAATGGTGAACGTTTG--CG 1454
|| ||||||| || |||||| ||| |||| |||||| ||| || |||||| |||| ||
Sbjct 1504 TGGTTCTGCT-AACGAAGCAAAGATGGCGTTGGAAACGAAAAACGGTGAATATTTGAACG 1562
Query 1455 CTTTAGTAAGATTTGTCTTGACA-TGGCTGAGATAGCTCCATACCCTCTCCGACTCAAGT 1513
|| | ||||||| |||||| | ||||| |||| | ||||||||||| | || |||||
Sbjct 1563 ATT--GCAAGATTTTTCTTGA-AGTGGCTAAGATGGTTCCATACCCTC-C--ACCCAAGT 1616
Query 1514 ACAACCTTGCAG-AGAAGCTTTGGTATGAAGACAAACTTCGAGGAGGAAGCCTT 1566
| | | || | ||| ||||||| |||||| | |||||| ||| |||||||
Sbjct 1617 ATTGCATA-CATCACAAGGTTTGGTACGAAGACTACCTTCGACGAGAAAGCCTT 1669
Score = 130 bits (70), Expect = 5e-29
Identities = 129/157 (82%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 849 ACTCTTTGTTTCCGGTCTCTCTCCCCAAACTGATATATCAGATATCATCAATTTCTTCAA 908
|||||||||| || ||| ||||| |||||| | |||||||||||| || ||||||||||
Sbjct 997 ACTCTTTGTTGCCAATCTTTCTCCTCAAACTAAAATATCAGATATCTTCGATTTCTTCAA 1056
Query 909 -AGATGTCGGAGAAGTCGTTCA-TGTTCAACTTACT-TTAAACAACAAAGGCAGGCATGT 965
| ||| |||||||| | | | | ||| ||||| | ||||| | |||| | ||||||
Sbjct 1057 TTG-TGTTGGAGAAGTTG-TAAGTATTCGACTTA-TGGTAAACCATGAAGGTAAGCATGT 1113
Query 966 GGGCTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAA 1002
||| |||||||||||||||||||||||||||||||||
Sbjct 1114 GGGTTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAA 1150
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 361 bits (195), Expect = 2e-98
Identities = 358/434 (82%), Gaps = 21/434 (5%)
Strand=Plus/Plus
Query 1148 GGTACGATGACTACCTTCGACGAGAAGGCCTTCTTATGGAAGAAAATGAGGCAGTGAAAG 1207
||||||| ||||||||||||| |||| || ||| || |||||| ||||| ||||| |||
Sbjct 5 GGTACGAAGACTACCTTCGACAAGAAAACCGTCTGATAGAAGAAGATGAGACAGTGGAAG 64
Query 1208 GACTTTATGAAACT-CC---T--GATTTTGTTGAGCCATTTGCCGTAACAAAAAAGACGC 1261
||||| |||| ||| || | |||| | ||||| | |||| |||| |||||||||||
Sbjct 65 GACTTGATGAGACTCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGACGC 124
Query 1262 TCTTTGCTT-CCAATCTCTCTCACCTAACTAAAATATCAGATATTATCAGTTTCTTCAAA 1320
||||| || |||||||| || || | |||| || |||| |||| |||||||| |
Sbjct 125 TCTTT-ATTGCCAATCTCCCTTTGAAAAGTGAAATGCCACATATCATCAATTTCTTCAGA 183
Query 1321 GATGTTGGAGAAGTTGTTCGTGTTCGACTTATTGTAGACCACATGGGTAAGCCTGTGGGC 1380
|||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 184 GATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAGACCACAGGGGTAAGCATGTGGGC 243
Query 1381 TGTGGCTTTATTGAGTTTGCTTCTGCTGA-AGAAGCAGAGAA-G-G-CGCTGGAAAAGAA 1436
||||||||| ||||||||||||||||| | | ||||| |||| | | |||||||||||||
Sbjct 244 TGTGGCTTTGTTGAGTTTGCTTCTGCTTACA-AAGCAAAGAAGGCGCCGCTGGAAAAGAA 302
Query 1437 GAATGGT--GAACGTTTGCGCTTTAG-TAAGATTTG-TCTTGACATGGCTGAGATAGCTC 1492
||| | ||| | ||||| | | || | ||| ||||||| |||||||||||||||
Sbjct 303 GAA-CCTAAGAA-GATTGCGGAATCGTTATG--TTGTTCTTGACGTGGCTGAGATAGCTC 358
Query 1493 CATACCCTCTCCGACTCAAGTACAACCTTGCAGAGAAGCTTTGGTATGAAGACAAACTTC 1552
||||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 359 CATACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTTC 418
Query 1553 GAGGAGGAAGCCTT 1566
||| || |||||||
Sbjct 419 GAGAAGAAAGCCTT 432
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 322 bits (174), Expect = 7e-87
Identities = 377/472 (80%), Gaps = 26/472 (6%)
Strand=Plus/Plus
Query 553 GACA-CTCCCGATTCTT-TTGA-GAAAGTACTCTTTCTTGCCAATCTCTCTCCCC-AGAC 608
|||| |||| |||| || |||| | ||||| || || || ||||||||||||||| | ||
Sbjct 450 GACACCTCCTGATT-TTGTTGACG-AAGTAGTCATTGTTTCCAATCTCTCTCCCCTA-AC 506
Query 609 TAAAATCTCAGATATCAAAGGTTTATTCAAAT-ATTTTG---GAGTTGTTAGTGTTCGTC 664
|||||| || ||||||||||||| ||| ||| | ||| ||||||||| ||||| |
Sbjct 507 TAAAATAGCACATATCAAAGGTTTCTTC-AATGGTGTTGCACAAGTTGTTAGCGTTCGAC 565
Query 665 TTATCGTAAACAACAAGGGTAAGCATCTGGGCTATGCCTTTGTTGAGTTTGCTTCTGCTT 724
|| | |||||| || ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 566 TTGTTGTAAACCACGAGGGTAAGCATGTGGGCTATGGATTTGTTGAGTTTGCTTCTGCTT 625
Query 725 ACCGCGCAAACAAGGCACTGAAAAAGAAGAACGGCGAATATTTGCATGATCGTCAGATTT 784
|| | ||||||||||| ||| || |||| || || |||||| |||| ||| | ||| ||
Sbjct 626 ACGGAGCAAACAAGGCTCTGGAAGAGAAAAATGGTGAATATCTGCACAATCATAAGA-TT 684
Query 785 AT-TTGATGAAAGAACATGATGAAACTCCAGATTATGTTGAGGCGGTTGCCATAGCGAAA 843
| |||||||||| || ||||| |||| | || || ||||| | ||||||| | ||
Sbjct 685 CTGTTGATGAAAGGAC---ATGAATCTCCTGGTTTTGCTGAGGAAGCTGCCATAAC--AA 739
Query 844 AAGACACTCTTTGTTTCCGGTCT-C-TCTCCCCAAACTGATATATCAGATATCATCAATT 901
|| || ||||||||| || ||| | | | || | | | |||||||||||||||||||
Sbjct 740 AA-ACGCTCTTTGTTGCCAATCTCCGTGACTCC--ATTCAGATATCAGATATCATCAATT 796
Query 902 TCTTCAAAGATGTCGGAGAAGTCGTTCATGTTCAACTTACTT-TAAACAACAAAGGCAGG 960
||||||||||||| |||||||| |||||||||| ||||| || |||||| | | || | |
Sbjct 797 TCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGACTTA-TTGTAAACAGCCAGGGAAAG 855
Query 961 CATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAGAAGAGAAGG 1012
|||| ||||| || ||||||||||||||||||||| |||||| ||||||||
Sbjct 856 CATGCGGGCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 907
Score = 215 bits (116), Expect = 1e-54
Identities = 294/375 (78%), Gaps = 32/375 (9%)
Strand=Plus/Plus
Query 1202 TGAAAGGACTTTATGAAACTCCTGATTTTGTTGAGCCATTTGCCGTAACAAAAAAGACGC 1261
||||||||| ||||| |||||| ||||| |||| | |||| |||| |||| ||||
Sbjct 692 TGAAAGGAC---ATGAATCTCCTGGTTTTGCTGAGGAAGCTGCCATAAC--AAAA-ACGC 745
Query 1262 TCTTTGCTT-CCAATCTCTC-TCACCT-AACTAAAATATCAGATATTATCAGTTTCTTCA 1318
|||||| || |||||||| | | | || | | | ||||||||||| |||| ||||||||
Sbjct 746 TCTTTG-TTGCCAATCTC-CGTGA-CTCCATTCAGATATCAGATATCATCAATTTCTTCA 802
Query 1319 AAGATGTTGGAGAAGTTGTTCGTGTTCGACTTATTGTAGACCA-C-ATGGGTAAGCCTGT 1376
||||||||||||||||||||| |||||||||||||||| || | | | ||| |||| ||
Sbjct 803 AAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCCA-GGGAAAGCATGC 860
Query 1377 GGGCTGTGGCTTTATTGAGTTTGCTTCTGCTGAA-GAAGCAGAGAAGGCGCTGGAAAAGA 1435
|||||| || ||| ||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 861 GGGCTGGGGTTTTGTTGAGTTTGCTTCTGCT-AACGAAGCAGAGAAGGCGCTGGTAAAGA 919
Query 1436 AGAATGGTGAACGTTTGCGCT-TTAGTAAGATTTGTCTTGACATG-GCTGAGATAGCTCC 1493
| |||||| ||||| | ||| ||||||| ||||||| | ||| ||| ||||||
Sbjct 920 AC---GGTGAATATTTGCACAATTAC-AAGATTTCTCTTGACG-GAGCTAAGACAGCTCC 974
Query 1494 ATACCCTCTCCGACTCAAGTACAACCTTGCAG-AGAAGCTTTGGTATGAAGACAAACTTC 1552
| ||| || | || ||||| ||| | | | ||| ||||||| |||||| | ||||
Sbjct 975 ACACCGTC-C--ACCCAAGTTTTGCCTAG-ATCACAAGGTTTGGTACGAAGACTACCTTC 1030
Query 1553 GAGGAG-GAAGCCTT 1566
|| ||| || |||||
Sbjct 1031 GAAGAGAGA-GCCTT 1044
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 252 bits (136), Expect = 9e-66
Identities = 229/273 (84%), Gaps = 10/273 (4%)
Strand=Plus/Plus
Query 794 AAGAACATGATGAAACT-CCAGATTATGTTGAGGCGGTTGCCAT-AGCGAAAAAGACACT 851
||| || |||||||||| ||| ||| ||||||||| ||||| | || |||||||| ||
Sbjct 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAG-AAAAAAGACGCT 524
Query 852 CTTTGTTTCCGGTCTCTCTCCCCAAACTGATATATCAGATATCATCAATTTCTTCAAAGA 911
|||||||||| |||||||||| || || | |||||||||||||||||||||||||||||
Sbjct 525 CTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAAGA 584
Query 912 TGTCGGAGAAGTCGTTCATGTTCAACTTACTT-TAAACAACAAAGGC-AGGCATGTGGGC 969
|| ||| |||| || ||||||| ||||| || || || ||| ||| || |||||||||
Sbjct 585 CGTTGGACAAGTTGTACATGTTCGACTTA-TTGTAGACTACACGGGCGAG-CATGTGGGC 642
Query 970 TATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAGAAGAGAAGGTGAGAGTAGTTTATAGT 1029
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 643 GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGTAAGAGTAGTTTATAGT 702
Query 1030 AATGATGAAAA-TAGGCAAGTAGTTATATTAAA 1061
||||||| || || ||||||| || |||||
Sbjct 703 AATGATGGAAGGTATTAAAGTAGTAAT-TTAAA 734
> AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase
family protein / RNA recognition motif (RRM)-containing protein
| chr3:18103152-18110216 FORWARD LENGTH=2766
Length=2766
Score = 230 bits (124), Expect = 4e-59
Identities = 218/262 (83%), Gaps = 12/262 (5%)
Strand=Plus/Plus
Query 1311 TTTCTTCAAAGATGTTGGAGAAGTTGTTCGTGTTCGACTTATTGT-AGACCAC-ATGGGT 1368
||||||||| |||||||||||||||||| |||||||||||||||| || || | | | ||
Sbjct 2220 TTTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAG-CCCCGA-GAGT 2277
Query 1369 AAGCCTGTGGGCTGTGGCTTTATTGAGTTTGCTTCTGC-TGAAGAAGCAGAGAAGGCGCT 1427
|||| |||||||| ||||||| |||||||||||||| | || |||| | | ||||||
Sbjct 2278 AAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTG-CTTAGCAAACATGGCGCT 2336
Query 1428 GGAAAAGAAGAATGGTGAACGTTTGCGC-TTTAGTAAGATTTGTCTTGACATGGCTGAGA 1486
||||||||||||||||||| ||||| | | | |||||||| ||||| ||||| |||
Sbjct 2337 GGAAAAGAAGAATGGTGAATATTTGCACGATCA-TAAGATTTTTCTTGGTGTGGCTAAGA 2395
Query 1487 TAGCTCCATACCCTCTC-CGACTCAAGTACAACCTTGCAGAGAAGCTTTGGTATGAAGAC 1545
|||||| ||||||| | ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2396 CAGCTCCGTACCCTC-CACGAATCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGAC 2454
Query 1546 AAACTTCGAGGAGGA-AGCCTT 1566
| |||| | ||| | ||||||
Sbjct 2455 TATCTTCTACGAG-ATAGCCTT 2475
Score = 182 bits (98), Expect = 1e-44
Identities = 240/307 (78%), Gaps = 15/307 (5%)
Strand=Plus/Plus
Query 203 TCGATTTCTTCAATGATGTTGCACAAGTTGTTCA-TGTTCGCCTTATTGTAAACCACAAG 261
||||||||||||||||||||| | |||||||| | |||||| |||||||||| || | ||
Sbjct 2216 TCGATTTCTTCAATGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAGCCCCGAG 2274
Query 262 GGCAAGCAT-TCGGGCTATGGCTTTGTTGAGTTTGCTTCTGCGAACGAAGCTAAGAAGGC 320
| |||||| | |||||||||||||||||||||||||||| | | ||| || | |||
Sbjct 2275 AGTAAGCATGT-GGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGC 2333
Query 321 TCTGGAAAAGAAGTCCGGTGAATATTTGCACGGTCATCGGATATTTCTTCATTTGGCTAA 380
|||||||||||| |||||||||||||||| |||| ||| |||||| | |||||||
Sbjct 2334 GCTGGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAA 2393
Query 381 TTATAAGAAACCTGCATACTTTCTACC---CAAGTATTGCATTG-ATCACAAGGTTTGGT 436
| | | || | ||| || || |||||| | ||| | | ||| ||||||
Sbjct 2394 G-ACA-GCT-CC-G--TACCCTCCACGAATCAAGTACAACCTTGCAG-AGAAGCTTTGGT 2446
Query 437 ATGATGACTACCTTGGACGAGAAAGCTTTCTGATAGAAGATGATGAGACAGAGGAAGGAC 496
| || ||||| ||| |||||| ||| ||||||||||||| |||||||||| ||||||||
Sbjct 2447 ACGAAGACTATCTTCTACGAGATAGCCTTCTGATAGAAGAAGATGAGACAGTGGAAGGAC 2506
Query 497 TTGATGA 503
|||||||
Sbjct 2507 TTGATGA 2513
Score = 87.9 bits (47), Expect = 3e-16
Identities = 82/98 (84%), Gaps = 6/98 (6%)
Strand=Plus/Plus
Query 899 ATTTCTTCAAAGATGTCGGAGAAGTCGTTCA-TGTTCAACTTACTT-TAAACAACAAAG- 955
|||||||||| ||||| |||||||| ||| | ||||| ||||| || ||| | | ||
Sbjct 2219 ATTTCTTCAATGATGTTGGAGAAGTTGTT-AGTGTTCGACTTA-TTGTAAGC-CCCGAGA 2275
Query 956 GCAGGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCT 993
| | ||||||||||||||||||||||||||||||||||
Sbjct 2276 GTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTTCT 2313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5