BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355985
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40030.1 | Symbols: | Protein kinase superfamily protein | ... 2527 0.0
> AT5G40030.1 | Symbols: | Protein kinase superfamily protein
| chr5:16026227-16028283 FORWARD LENGTH=1500
Length=1500
Score = 2527 bits (1368), Expect = 0.0
Identities = 1459/1503 (97%), Gaps = 5/1503 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAACCAAACTCCAAATCTTGAATCTTCTTTACATGATTGTTCTTCTTCCAATTAC 60
|||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTAAACAAACTCCAAATCTTGAA---TCTTTACAAGATTGTTCTTCTTCCAATTAC 57
Query 61 AACAATGCCAATGCTAGTCCAGTTTCTGGATCCGCAAGCTTCAAAACTAGCAGTAATGGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AACAATGCCAATGCTAGTCCAGTTTCTGGATCCGCAAGCTTCAAAACTAGCAGTAATGGC 117
Query 121 TCTGAAGACGTTAGGCTTAACAATAGTATCAGCTTAAGTTTCTGTAGCAGTAACAGTGTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTGAAGACGTTAGGCTTAACAATAGTATCAGCTTAAGTTTCTGTAGCAGTAACAGTGTA 177
Query 181 AGCAGTGAAGCTAATCTCGAAAAGTCTCAATCTTTCGATGCAAACGAGGCTAATTTCAAA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 AGCAGTGAAGCTAATCTCGAAAAGACTCAATCTTTCGATGCAAACGAGGCTAATTTCAAA 237
Query 241 AGGGTCTTTGCTCCTTCGAAGCCACATAAAGGGAACGATCTTAGATGGGACGCGATTCAG 300
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 238 AGGGTCTTTGCTCCTTCGAAGCCGCATAAAGGAAACGATCTTAGATGGGACGCGATTCAG 297
Query 301 AGTGTTAAGTGTAGTAAAAACGAGGATCTGGGTTTAGGGCATTTTAGGTTGTTGAAGAAG 360
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AATGTGAAGTGTAGTAAAAACGAGGATCTGGGTTTAGGGCATTTTAGGTTGTTGAAGAAA 357
Query 361 TTAGGATGTGGAGATATTGGGAGTGTGTATTTAGCTGAGCTTAGAGAGATGGGATGTTTC 420
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 TTGGGATGTGGAGATATTGGGAGTGTGTATTTAGCTGAGCTCAGAGAGATGGGATGTTTC 417
Query 421 TTTGCCATGAAAGTGATGGATAAAGGAATGTTGATTGGTAGGAAGAAACTGGTTAGAGCT 480
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 TTTGCTATGAAAGTGATGGATAAAGGAATGTTGATTGGTAGGAAGAAATTGGTTAGAGCT 477
Query 481 CAGACTGAGAGAGAGATTTTGGGTTTGTTGGATCACCCTTTCTTGCCTACGCTTTACTCT 540
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 478 CAGACTGAGAGAGAGATTTTGGGTTTGTTAGATCATCCTTTCTTGCCTACTCTTTACTCT 537
Query 541 CATTTCGAGACTGAGAAGTTTTCTTGTCTTTTGATGGAGTTTTGTAGCGGTGGAGATCTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CATTTCGAGACTGAGAAGTTTTCTTGCCTTTTGATGGAGTTTTGTAGCGGTGGAGATCTT 597
Query 601 CATATTCTCCGGCAGAAACAGCCCGGAAAACATTTCTCCGAACTAGCCGCCAGGTTTTAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CATATTCTCCGGCAGAAACAGCCCGGAAAACATTTCTCCGAACTAGCCGCCAGGTTTTAT 657
Query 661 GCTTCTGAAGTACTTCTTGCGCTTGAGTATCTTCATATGATGGGTGTAGTGTACAGAGAT 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 GCTTCTGAAGTACTTCTTGCGCTAGAGTATCTTCATATGATGGGTGTAGTGTACAGAGAT 717
Query 721 TTGAAACCAGAGAATGTAATGGTGAGAGAAGATGGTCACATTATGCTTTCGGATTTCGAT 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGAAGCCAGAGAATGTAATGGTGAGAGAAGATGGTCACATTATGCTTTCGGATTTCGAT 777
Query 781 CTTTCGTTGCAGAGTTTCGTGAGTCCTACATTGATTCAATCAACTTCACAACCGTCTTGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 CTTTCGTTGCAGAGTTTCGTGAGTCCTACATTGATTCAATCAACTTCACAACCTTCTTGT 837
Query 841 CATATTGCTTCGTACTGCATTCAACCTCCTTGCATAGATCCATCCTGCAAATTACCTGTA 900
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CATATAGCTTCGTACTGTATTCAACCTCCTTGCATAGATCCATCCTGCAAATTACCTGTA 897
Query 901 GCCTGTATCCAACCATCGTGCTTCAAGCCTCGTTTCCTCAACAACAAACCACGAAAGGCG 960
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 GCCTGTATCCAACCATCATGCTTCAAGCCTCGGTTCCTCAACAACAAACCACGAAAGGCG 957
Query 961 AAAACCGAAAAAGCTGGTTCAGATTCACTCCCAATGCTAATAGCTGAGCCAACGGATGCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 AAAACCGAAAAAGCTGGTTCAGATTCACTCCCAATGCTAATAGCTGAGCCAACGGCTGCT 1017
Query 1021 CGGTCTATGTCATTCGTTGGCACGCATGAGTATTTAGCTCCTGAGATCATAAGAGGAGAT 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CGATCTATGTCATTCGTTGGCACGCATGAGTATTTAGCTCCTGAGATCATAAGAGGAGAT 1077
Query 1081 GGTCATGGAAGTTCTGTTGATTGGTGGACTTTTGGTATATTTCTCTACGAGTTGTTAACC 1140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGTCATGGAAGTTCTGTGGATTGGTGGACTTTTGGTATATTTCTCTACGAGTTGTTAACC 1137
Query 1141 GGGAAAACACCATTCAAAGGAAACGGAAACCGCGAAACGCTCTTCAATGTTGTTGGGCAA 1200
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 GGGAAAACGCCATTCAAAGGAAACGGAAACCGCGAAACGCTCTTCAATGTTGTTGGACAA 1197
Query 1201 CCG-TTAAAGTTTCCCGAAGGATCTATAAGCTTTGCAGCTAAGGATTTGATTCGAGGTTT 1259
||| |||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1198 CCGCTTAA-GTTTCCGGAAGGATCTATAAGCTTTGCAGCTAAAGATTTGATTAGAGGTTT 1256
Query 1260 GCTAACTAAAGATCCTAAGAAGAGATTAGGATTCAAGAAAGGTGCTACAGAGATAAAGCA 1319
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1257 GCTAACTAAAGATCCTAAGAAGAGACTAGGGTTCAAGAAAGGTGCTACAGAGATAAAGCA 1316
Query 1320 ACATCCTTTCTTCAACAATGTCAATTGGGCTCTAATAAGAAGCACAACCCCACCAGAAAT 1379
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 ACATCCTTTCTTCAATAATGTCAATTGGGCTCTAATCAGAAGCACAACCCCACCAGAAAT 1376
Query 1380 ACCGAAACCAATCGATCTTTCGATACTAAATGAAACCCTCAAGTCATCGGTTCAACAACA 1439
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1377 ACCGAAACCGATCGATCTTTCGATACTAAATGAAACCCTCAAGTCATCAGTTCAACAACA 1436
Query 1440 AGGCAAGCATTCAAAACAATCAGATTCATCATCTGGTCCTTATTTAGATTTTGAGTTCTT 1499
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 AGGCAAGCATTCAAAACAATCAGATTCATCATCAGGTCCTTATTTAGATTTTGAGTTCTT 1496
Query 1500 CTA 1502
|||
Sbjct 1497 CTA 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5