BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg355993
Length=2202
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein | c... 1552 0.0
AT4G21730.1 | Symbols: | pseudogene of N-ethylmaleimide sensit... 141 3e-32
> AT4G04910.1 | Symbols: NSF | AAA-type ATPase family protein |
chr4:2489417-2495766 REVERSE LENGTH=2608
Length=2608
Score = 1552 bits (840), Expect = 0.0
Identities = 1613/1979 (82%), Gaps = 82/1979 (4%)
Strand=Plus/Plus
Query 168 TGATGGAAGTATTGCTCTGAATTCGATTCAACGACGACATGCTAGAGTTTCTG-CTGGTG 226
|||||||| ||||||||| ||| | |||||| | ||||| ||||||||||| | ||||||
Sbjct 295 TGATGGAAATATTGCTCTCAATGCTATTCAAAGGCGACACGCTAGAGTTTC-GACTGGTG 353
Query 227 ACATTGTTTCTG-TAACAAGATTTATTCCTCCTGAAAGCTTTGACT-TGACTGTTCTGAC 284
| || || |||| || | |||||| |||||||||||| ||||| | || || | |||||
Sbjct 354 ATATGGTATCTGTTAGC-AGATTTGTTCCTCCTGAAAATTTTGA-TCTGGCTATGCTGAC 411
Query 285 AG-TTGACTTAGAATTTGTCAAAAAAGGGACTAAAAATGAACAGATTGATGCTACTCTCC 343
| | || || |||||||| || ||||| ||||||| || ||| |||||||| ||||||
Sbjct 412 -GCTGGAGTTGGAATTTGTGAAGAAAGGAACTAAAAGCGAGCAGGTTGATGCTGCTCTCC 470
Query 344 TCTCAACTCAACTGAAGAAGAAATTCACTAACCAGGTCTTGACAGTAGGTCA-AAGAGTT 402
| || || || || |||| ||||| ||| |||||||||||||| ||||| || || ||
Sbjct 471 TTTCGACCCAGCTTAAGAGGAAATACACCAACCAGGTCTTGACTGTAGGCCAGAA-AGCG 529
Query 403 ACATTTGAGTATCATGGAACTAACTACATTTTTACGGTCAATCGAGCGGTTATAGTGGCT 462
||||||||||||||||||||||| |||||| |||||||||||||||||| || || |
Sbjct 530 ACATTTGAGTATCATGGAACTAATTACATTCTTACGGTCAATCGAGCGG--AT-GT---T 583
Query 463 GATGATGAGAACCAAACTAATTGTATCGAAAGAGGGATGATTTGTAAGGATACATATTTT 522
|| | | || | || || || | || ||||||||| || | | ||| || || ||| ||
Sbjct 584 GAGGGTCAGGATCACACGAACGGCATTGAAAGAGGGTTGCTCTCTAAAGACACGTATATT 643
Query 523 GTGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTATCAACCAACGAGAATCTGTTA-C 581
|||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| || |
Sbjct 644 GTGTTTGAAGCATCAAATGCAAGTGGCATAAAGATTGTCAACCAACGGGAAGCTGCTAGC 703
Query 582 AAGCAAGATATTTAAAGAAAAGGAGTTTAACCTTCAATCCCTAGGTATAGGTGGT-TTAG 640
| |||| ||||| ||| | ||||| ||||||||| | || || || ||||||||| || |
Sbjct 704 A-GCAATATATTCAAACATAAGGAATTTAACCTTGAGTCGCTGGGAATAGGTGGTCTT-G 761
Query 641 GTGCAGAGTTTGTTGCTATATTTCGAAGAGCTTTTACTTCTCGTATACTTCCTCG-CGAT 699
|||||||||||| || ||||||| ||||||||||| |||||||| || |||||| | ||
Sbjct 762 GTGCAGAGTTTGCTGATATATTTAGAAGAGCTTTTGCTTCTCGTGTATTTCCTCCTC-AT 820
Query 700 GTCGTGAACAGAATTGGGGC-AAAGCACGTTAAAGGGATGCTTCTGTTTGGACCTCCCGG 758
||| | |||| | ||| |||||| ||||||||||||||||| ||||||||||| ||
Sbjct 821 GTCACCAGCAGACT-GGGAATAAAGCATGTTAAAGGGATGCTTCTTTTTGGACCTCCTGG 879
Query 759 TACTGGCAAGACC-TTGATGGCACGCCAAATTGGCAAA-ATGCTTAATGGAAAGGAGCCA 816
||||||||| ||| || |||||||| |||||||| ||| ||||||||||||||||| |||
Sbjct 880 TACTGGCAAAACCCTT-ATGGCACGGCAAATTGG-AAAGATGCTTAATGGAAAGGATCCA 937
Query 817 AAGATCGTTAATGGTCCTGAAGTGCTAAGCAAGTTCGTCGGCGAGACAGAAAAGAATGTA 876
|||||||||||||| ||||| ||||| |||||||| || || ||||||||||||||||||
Sbjct 938 AAGATCGTTAATGGGCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAGAATGTA 997
Query 877 AGAGATCTG-TTTGCTGATGCTGAA-AATGACCAGAGAACACTTGGTGATGCTAGTGAGC 934
||||| || |||||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 998 AGAGA-CTTATTTGCTGATGCTGAGCAA-GACCAGAGGACCCTTGGTGATGCTAGTGAGT 1055
Query 935 TACATATCATTATTTTCGATGAAATTGATGCTATTTGTAAGTCAAGAGGGTCAACCAGGG 994
| ||| |||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 1056 TGCATGTCATTATTTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTTCAACCAGAG 1115
Query 995 ATGGGACAGGTGTCCATGATGGTATTGTAAACCAGCTCTTGACAAAGATAGATGGTGTTG 1054
|||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1116 ATGGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGG 1175
Query 1055 AGGCTTTGAACAATGTTTTACTAATTGGAATGACAAATAGAAAAGATATGCTTGATGAAG 1114
|||| || ||||||||||| || |||||||||||||| ||||| ||| ||||||||||||
Sbjct 1176 AGGCCTTAAACAATGTTTTGCTGATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAG 1235
Query 1115 CTCTTTTAAGGCCTGGAAGATTAGAGGTTCATATTGAAATTAGTCTTCCCGATGAAGTTG 1174
|||||||||||||||||||||| |||||||| |||| || || ||||| ||||||| ||
Sbjct 1236 CTCTTTTAAGGCCTGGAAGATTGGAGGTTCAGGTTGAGATAAGCCTTCCTGATGAAGCTG 1295
Query 1175 GACGTTTACAAATTCTTCAGATTCATACAAAGAAAATGAAGGATAATTCTTTTCTTTCTC 1234
| ||| ||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 1296 GGCGTCTACAAATTCTTCAGATTCATACAAATAAGATGAAGGAAAATTCTTTCCTTGGGA 1355
Query 1235 CTGATGTCAATCTCCAAGAACTTGCTGCTAGGACAAAGAATTACAGTGGTGCTGAGCTTG 1294
||||| ||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||
Sbjct 1356 CTGATATCAATCTCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAGCTTG 1415
Query 1295 AAGGTGTAGTAAAAAGTGCAACATCATATGCTTTCAATAGACAACTGAGCATGGAAGATC 1354
||||||| || |||||||| ||||||||||| || || |||||||| |||||||| ||||
Sbjct 1416 AAGGTGTTGTTAAAAGTGCTACATCATATGCATTAAACAGACAACTAAGCATGGATGATC 1475
Query 1355 TAACAAAGCCAGTGGATGAAGAAAATATTAAAATTACTATGGATGATTTTCTTCAAGCC- 1413
| |||||||| ||||| ||||| ||||| || || |||||||| |||||||| || ||
Sbjct 1476 TTACAAAGCCTGTGGAAGAAGAGAATATCAAGATCACTATGGAGGATTTTCTCCACGCTA 1535
Query 1414 -CTACTCGAAGTTAAACCTGCATTTGGAGCCTCTTCAAAAGACCTTGAACTCTGCAGAC- 1471
||| | |||||| ||||||||||||||||||| || | ||||| || | ||||||||
Sbjct 1536 TCTA-T-GAAGTTCAACCTGCATTTGGAGCCTCCACAGATGACCTAGAGCGCTGCAGACT 1593
Query 1472 CTAA-GGGATTTGTGGATTGTGGTTATCGGCAAAAGT-ACATCTACGAAAGAG-TCATGT 1528
| || ||||| || ||||||||| ||||||| || | |||| ||| |||||| | |||
Sbjct 1594 C-AATGGGATG-GTAGATTGTGGTCATCGGCATAA-TCACATTTACAAAAGAGCT-ATGC 1649
Query 1529 TTCTTGTTGAGCAAGTTAAAGTCA--ACGAAATAAGTCCTCCACTCACTTGCCTTCTTCA 1586
|||| || |||||||||||||| | || | | | |||||| | ||||||||||||| |
Sbjct 1650 TTCTAGTCGAGCAAGTTAAAGTTAGTACTAGA-A-GTCCTCTAGTCACTTGCCTTCTGGA 1707
Query 1587 TGGGTCTAGTGGAAGTGGAAAAACTGCGTTAGCCGCGACCATTGGCATCGACAGTGACTT 1646
||| | ||||||||||| |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct 1708 GGGGCCCAGTGGAAGTGGGAAAACTGCTTTAGCAGCAACAATTGGTATCGATAGTGACTT 1767
Query 1647 CCCATATGTCAAAATAGTCTCTGCAGAGGCTATGAATGGCCTT-CATGAGAGCAAAAAAT 1705
||||||||| || ||||| ||||| || |||||| ||| ||| | |||||||| |||||
Sbjct 1768 CCCATATGTTAAGATAGTTTCTGCGGAAACTATGATTGGTCTTTC-TGAGAGCACAAAAT 1826
Query 1706 GCGCACACATTACCAAGGTCTTTGAAGATGCATACAAATCACCAATGAGCAT-AGTTATC 1764
| || |||||| |||||||||||| |||||||| ||||| ||||||||||| | |||||
Sbjct 1827 GTGCTCACATTGTCAAGGTCTTTGAGGATGCATATAAATCTCCAATGAGCATCA-TTATC 1885
Query 1765 CTTGACGATATTGAAAGGCTGTTGGAGTACACT-GAAATTGGACCGCGATTTTCAAACGA 1823
||||||||||||||||| ||||||| | || | | ||| || || || ||||||||| |
Sbjct 1886 CTTGACGATATTGAAAGATTGTTGGAATTCA-TAGCAATCGGTCCTCGCTTTTCAAAC-A 1943
Query 1824 -AATCCTTCA-AT-CATT-ATTGACTTTCCTCAAACAGTCT-CCTCCT--GGTGGAAGCA 1876
||| |||| | | | || | | ||| |||||| | || |||||| || ||||| |
Sbjct 1944 TAAT--TTCACAGACGCTGATGGTCCTTC-TCAAAC-GACTTCCTCCTAAGG-GGAAG-A 1997
Query 1877 AACTTCTTGTACTT-GGTACAACAAGTGAAGTAACGTTCTTAAAATCTGTTGGT-T-TGC 1933
||||||| || ||| || ||||||||||||||||| |||||| | ||||||||| | | |
Sbjct 1998 AACTTCTCGT-CTTTGGGACAACAAGTGAAGTAACCTTCTTAGAGTCTGTTGGTATCT-C 2055
Query 1934 GTAAAA-CTTTTTCTGTTACGT-ACTATGTTTC-ATTATTG-AGGACAGAGGATGCCATG 1989
| | ||| | |||| || | ||| |||| | | | || | | |||||| || | |
Sbjct 2056 -TGATTGCTTCT-CTGTCAC-TCACTCTGTTCCGAC-ACTGCAAAA-AGAGGACGCAAAG 2110
Query 1990 AAGGTGCTAGAGCAACTAAACGTGTTCTCAGAAGATGATATCGAAGAAGCTTCTGAAGCC 2049
||||||||| | || || ||| | |||||||| |||||| | || |||| | || ||
Sbjct 2111 AAGGTGCTAAATCAGCTTAACCTCTTCTCAGAGGATGATGTTGATTCAGCTGCAGAGGCT 2170
Query 2050 CTTGATGATATTCCAATAAAGCAGCTATACCTTCTTATGGAGATGGCAGCTCAAAGAGA 2108
|| |||| || ||||| ||| || | ||| | || || || ||||| || ||| ||||
Sbjct 2171 CTCAATGACATGCCAATCAAGAAGATTTACATGCTAATAGAAATGGCTGCGCAAGGAGA 2229
> AT4G21730.1 | Symbols: | pseudogene of N-ethylmaleimide sensitive
factor (NSF) | chr4:11544933-11545527 FORWARD LENGTH=595
Length=595
Score = 141 bits (76), Expect = 3e-32
Identities = 112/130 (86%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 2059 ATTCCAATAAAGCAGCTATACCTTCTTATGGAGATGGCAGCTCAAAGAGATGGTATGTCC 2118
|||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 299 ATTCCAATTAAGCAGTTATACCTTCTTATGGAGATGGCAGCTCAAAGAGATGGCAGGTCT 358
Query 2119 AAAGAGCCGATCTACAACAGGAAGGAGAAACTCAACATCTGTCATTTCTTAGATTGTCTT 2178
|||||||| | |||| |||||||| |||||| ||||| ||||||| | |||||||||
Sbjct 359 GAAGAGCCGGTTTACATTAGGAAGGAAAAACTCGACATCACTCATTTCATGGATTGTCTT 418
Query 2179 CAAGAAGTTA 2188
|| ||| |||
Sbjct 419 CAGGAATTTA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109236385920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5