BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg355996 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT5G39995.1 | Symbols: | pseudogene, similar to putative Myb/M... 346 2e-94 > AT5G39995.1 | Symbols: | pseudogene, similar to putative Myb/Myb-related protein, blastp match of 52% identity and 1.4e-24 P-value to GP|21321780|gb|AAM47303.1|AF377946_5|AF377946 putative Myb/Myb-related protein {Oryza sativa (japonica cultivar-group)} | chr5:16008538-16009596 FORWARD LENGTH=1059 Length=1059 Score = 346 bits (187), Expect = 2e-94 Identities = 234/256 (91%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 174 AGGTAAGACTTGTAGATCAAGGTGGTTTAACCATTTGGATCCAAGGATTAGGAATGATGC 233 ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 398 AGGTAAGTCTTGTAGATCAAGGTGGTATAACCATTTGGATCCAAGGATTAGGAATGATGT 457 Query 234 TTTTAGTGACGAGGAAGAAAAATTGCTAATCAAAGCTTATAACGAATGGGGTTGCCAATG 293 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 458 TTTTAGTGACGAGGAAGAAAAATTGCTAATCAAAGCTTACAACGAATGGGGTTGCAAATG 517 Query 294 GTCTAGGATTGCTAGGCTTTTTCGTGGAAGAACAGACAGACAAATGCAGAAACTATGGCG 353 ||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||| Sbjct 518 GTCTAAGATTGCTAGGCTTTTCCCTGGAAGAACAGACAGACAAATGCAGAGACTATGGCG 577 Query 354 CAA-GGTCATGAAAA-AA--TTGAAGAAGACATCAACTTCTATTCATGAACTAAATGCAA 409 | ||||||||||| || ||| ||| | ||| |||||||| ||||||||||| ||||| Sbjct 578 -ATTGGTCATGAAAACAAAATTGGAGAGGCCATAAACTTCTACTCATGAACTAACTGCAA 636 Query 410 ATGACAAAAGAGAAGG 425 ||||||||| |||||| Sbjct 637 ATGACAAAATAGAAGG 652 Score = 224 bits (121), Expect = 1e-57 Identities = 173/197 (88%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 423 AGGGTTTTTACGTGATGAAAGTAGAAAGATGCCACAAGAGGAAACCACTCACCTCGAAGC 482 ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 729 AGGGTTTGTACGTGATAAAAGTACAAAGATGCCACAAGAGGAAACCACTCACCTCGAAGC 788 Query 483 TAATAAGTATCTCAAAGAAACCAGGCAAT-ACTTAGCTCATCAGCGTCACTTTTATAACA 541 ||| ||||| ||| ||||| | | ||| ||||||||||||| |||| ||| ||||||| Sbjct 789 TAA---GTATCGCAACGAAACAATG-AATTACTTAGCTCATCAACGTCGCTTCTATAACA 844 Query 542 TCCCTACAGGTTACTTGCCAATGTCCACACCACATGTCTCCATCTCTCAACCATCATCAT 601 |||||| ||||| |||| ||||||||||||| | |||||||| ||||||||||||||||| Sbjct 845 TCCCTAAAGGTTTCTTGGCAATGTCCACACCGCCTGTCTCCAACTCTCAACCATCATCAT 904 Query 602 CATCAT--T-ACCATCA 615 |||||| | ||||||| Sbjct 905 CATCATCATCACCATCA 921 Score = 195 bits (105), Expect = 8e-49 Identities = 142/159 (89%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 26 AGAGACCATCAAATGAGGTTCAAGAAGAAATCAATTCACT-AT-TGAGCAGACGTTGGAC 83 ||| ||| |||||||||||||||||||||||||||||| | | || | | ||||||||| Sbjct 174 AGACACCGTCAAATGAGGTTCAAGAAGAAATCAATTCATTGAGGTG-GAA-ACGTTGGAC 231 Query 84 ACTTTCAGAGGATTTGAAACTAAAAGAGCTTGTGGCTGTGTCTGGTCCT-AGAAAATGGA 142 ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| Sbjct 232 ACTTTCAGAGGATTTGAAACTAAAAGAGCTTGTGGCTGTGTATGGTCCTCA-AAAATGGC 290 Query 143 CGCAAATTGGAAAGCAAATGCAAGGAAGAACAGGTAAGA 181 |||| |||||||||||||||||||| ||| ||||| ||| Sbjct 291 CGCACATTGGAAAGCAAATGCAAGGCAGATCAGGTTAGA 329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5