BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg355996

Length=819
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G39995.1 | Symbols:  | pseudogene, similar to putative Myb/M...   346    2e-94


> AT5G39995.1 | Symbols:  | pseudogene, similar to putative Myb/Myb-related 
protein, blastp match of 52% identity and 1.4e-24 
P-value to GP|21321780|gb|AAM47303.1|AF377946_5|AF377946 
putative Myb/Myb-related protein {Oryza sativa (japonica cultivar-group)} 
| chr5:16008538-16009596 FORWARD LENGTH=1059
Length=1059

 Score =  346 bits (187),  Expect = 2e-94
 Identities = 234/256 (91%), Gaps = 5/256 (2%)
 Strand=Plus/Plus

Query  174  AGGTAAGACTTGTAGATCAAGGTGGTTTAACCATTTGGATCCAAGGATTAGGAATGATGC  233
            ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  398  AGGTAAGTCTTGTAGATCAAGGTGGTATAACCATTTGGATCCAAGGATTAGGAATGATGT  457

Query  234  TTTTAGTGACGAGGAAGAAAAATTGCTAATCAAAGCTTATAACGAATGGGGTTGCCAATG  293
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  458  TTTTAGTGACGAGGAAGAAAAATTGCTAATCAAAGCTTACAACGAATGGGGTTGCAAATG  517

Query  294  GTCTAGGATTGCTAGGCTTTTTCGTGGAAGAACAGACAGACAAATGCAGAAACTATGGCG  353
            ||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct  518  GTCTAAGATTGCTAGGCTTTTCCCTGGAAGAACAGACAGACAAATGCAGAGACTATGGCG  577

Query  354  CAA-GGTCATGAAAA-AA--TTGAAGAAGACATCAACTTCTATTCATGAACTAAATGCAA  409
             |  ||||||||||| ||  ||| ||| | ||| |||||||| ||||||||||| |||||
Sbjct  578  -ATTGGTCATGAAAACAAAATTGGAGAGGCCATAAACTTCTACTCATGAACTAACTGCAA  636

Query  410  ATGACAAAAGAGAAGG  425
            ||||||||| ||||||
Sbjct  637  ATGACAAAATAGAAGG  652


 Score =  224 bits (121),  Expect = 1e-57
 Identities = 173/197 (88%), Gaps = 8/197 (4%)
 Strand=Plus/Plus

Query  423  AGGGTTTTTACGTGATGAAAGTAGAAAGATGCCACAAGAGGAAACCACTCACCTCGAAGC  482
            ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct  729  AGGGTTTGTACGTGATAAAAGTACAAAGATGCCACAAGAGGAAACCACTCACCTCGAAGC  788

Query  483  TAATAAGTATCTCAAAGAAACCAGGCAAT-ACTTAGCTCATCAGCGTCACTTTTATAACA  541
            |||   ||||| ||| ||||| | | ||| ||||||||||||| |||| ||| |||||||
Sbjct  789  TAA---GTATCGCAACGAAACAATG-AATTACTTAGCTCATCAACGTCGCTTCTATAACA  844

Query  542  TCCCTACAGGTTACTTGCCAATGTCCACACCACATGTCTCCATCTCTCAACCATCATCAT  601
            |||||| ||||| |||| ||||||||||||| | |||||||| |||||||||||||||||
Sbjct  845  TCCCTAAAGGTTTCTTGGCAATGTCCACACCGCCTGTCTCCAACTCTCAACCATCATCAT  904

Query  602  CATCAT--T-ACCATCA  615
            ||||||  | |||||||
Sbjct  905  CATCATCATCACCATCA  921


 Score =  195 bits (105),  Expect = 8e-49
 Identities = 142/159 (89%), Gaps = 6/159 (4%)
 Strand=Plus/Plus

Query  26   AGAGACCATCAAATGAGGTTCAAGAAGAAATCAATTCACT-AT-TGAGCAGACGTTGGAC  83
            ||| ||| |||||||||||||||||||||||||||||| | |  || | | |||||||||
Sbjct  174  AGACACCGTCAAATGAGGTTCAAGAAGAAATCAATTCATTGAGGTG-GAA-ACGTTGGAC  231

Query  84   ACTTTCAGAGGATTTGAAACTAAAAGAGCTTGTGGCTGTGTCTGGTCCT-AGAAAATGGA  142
            ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| 
Sbjct  232  ACTTTCAGAGGATTTGAAACTAAAAGAGCTTGTGGCTGTGTATGGTCCTCA-AAAATGGC  290

Query  143  CGCAAATTGGAAAGCAAATGCAAGGAAGAACAGGTAAGA  181
            |||| |||||||||||||||||||| ||| ||||| |||
Sbjct  291  CGCACATTGGAAAGCAAATGCAAGGCAGATCAGGTTAGA  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39885912718


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5