BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356016
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39840.1 | Symbols: | ATP-dependent RNA helicase, mitochond... 3742 0.0
> AT5G39840.1 | Symbols: | ATP-dependent RNA helicase, mitochondrial,
putative | chr5:15946769-15949186 FORWARD LENGTH=2331
Length=2331
Score = 3742 bits (2026), Expect = 0.0
Identities = 2232/2334 (96%), Gaps = 3/2334 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGAGGCGTAGCTGGAGTTTTGCGTAGAGCCTATAGTTCAAGAGTTAGGGTTCTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGCGAGAGGCGTAGCTGGAGTTTTGCGTAGAGCCTATAGTTCAAGAGTTACGGTTCTA 60
Query 61 TTATCGACACGAAATTTACATTCTTTTAGAGAAACTCAATCTAGACCTCTTTGTAATTCT 120
|| |||||||||||||||||||||||||||||| || | |||||| ||||||||||||||
Sbjct 61 TTCTCGACACGAAATTTACATTCTTTTAGAGAATCTGAGTCTAGATCTCTTTGTAATTCT 120
Query 121 GATTTTGATGTGCCCACGAACCGGTTTTGTTCGTGTAATCGGGTTCGGATTCAGCTTCCT 180
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 121 GATTTTGATGTGCCCACGAACCGGTTTTGTTCGGGTAATCGGGTTCGGATTCAGTTTCCA 180
Query 181 TGGAATGATTACAGATTTGGGTGCTTTGAGATTGGTAAAGTTAGGACCTTTTCGTCTACT 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TGGAATGATTACAGATTTGGGTGCTTTGAGATTGGTAAAGTTAGGAGCTTTTCGTCTACT 240
Query 241 GTGGATAATAACGGCGAAAATGATGATGTTGAAGAAAGTGCTGGTTCTGAGAGTGATGAT 300
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 241 GTGGATAATAACGGCGAAAATGATGATATTGAAGAAAGTGTTGGTTCTGAGAGTGATGAT 300
Query 301 TATGATGAGGAAGGTGTGATTAATGAACTTGGTGATGTAGATGAAAGCTTGTTGAATGAT 360
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 301 TATGATGAGGAAGGTTTGATTAATGAACTTAGTGATGTAGATGAAGGCTTGTTGAATGAT 360
Query 361 TCAGTGGTTGCTAAGACGGATGAGATTGGTAGCGAGGCTGCTCGTGCTTTGAACGCTCGG 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TCAGTGGTTGCTGAGACGGATGAGATTGGTAGCGAGGCTGCTCGTGCTTTGAACGATCGG 420
Query 421 TATAATGATCGTGTGGAGTTATACAGAGAGCTTAGGGAAAGTGAAGTGCGTTCTAAGCTT 480
||| |||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 421 TATCATGATCCTGTGGAGTTGTACAGGGAGCTTAGGGGAAGTGAAGTGCGTTCTAAGCTT 480
Query 481 CAGCTTAGTGAATGGGATAGTTTACATGAGATTTTCGGGTATTTTGCACAGTCAGGATGG 540
|||| |||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||
Sbjct 481 CAGCATAGTGAATGGGATAGTCTACATGAGATTTTCGGGTTTTTTGCGCAGTCGGGATGG 540
Query 541 GCGGCTAATCAGGCTCTTGCAATCTATATTGGGAAATCGTTTTTCCCTACTGCTGTTAGC 600
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 GCGGCTAATCAGGCTCTTGCAATCTATATCGGGAAATCGTTTTTCCCAACTGCTGTTAGC 600
Query 601 AAGTTCCGGGACTTCTTCCTTGAGAAATGTAGAATTGAGGTTGTTCAGGATCTTGTTCGT 660
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 AAGTTTAGGGACTTCTTCATTGAGAAATGTGGAATTGAGGTTGTTCAGGATCTTGTTCGT 660
Query 661 GTTGGGCCAACTGATGAAGCTGTTAAGTTTTTGTTCCCTGTGTTTGTTGAATTCTGTATT 720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTGGGCCAACTGATGTAGCTGTTAAGTTTTTGTTCCCTGTGTTTGTTGAATTCTGTATT 720
Query 721 GAAGAGTTTCCTGATGAGATCAAACGTTTTCAGAGTATTGTTGATACTGCAGACCTCACG 780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 GAAGAGTTTCCTGATGAGATCAAACGTTTTAAGAGTATTGTTGATACTGCAGACCTCACG 780
Query 781 AAGCCTGCAACTTGGTTTCCTTTTGCTCGTGCTATGAAGCGTAAAATCGTTTACCATTGT 840
|| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 AAACCCGCGACTTGGTTTCCTTTCGCTCGTGCTATGAAGCGTAAAATCGTTTACCATTGT 840
Query 841 GGACCGACTAACAGTGGCAAAACGTACAATGCTTTGCAGCGGTTTATGGAAGCTAAGAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGACCGACTAACAGTGGCAAAACGTACAATGCTTTGCAGCGGTTTATGGAAGCTAAGAAT 900
Query 901 GGATTGTATTGCAGCCCACTTAGGTTATTAGCCATGGAAGTTTTTGATAAAGTAAATGCT 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGATTGTATTGCAGCCCTCTTAGGTTATTAGCCATGGAAGTTTTTGATAAAGTAAATGCT 960
Query 961 CTAGGGATTTACTGTAGTCTCTTGACTGGACAAGAGAAGAAACATGTTCCGTTCGCCAAT 1020
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 TTAGGGATTTACTGTAGTCTCTTGACTGGACAAGAGAAGAAATATGTTCCGTTCGCCAAC 1020
Query 1021 CATGTATCTTGTACGGTTGAAATGGTGTCTACAGATGAGTTATATGAAGTGGCTGTGATC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 CATGTATCTTGTACGGTTGAAATGGTGTCTACAGATGAGTTATATGAAGTGGCTGTGCTC 1080
Query 1081 GATGAAATACAAATGATGGCAGATCCTAGTAGAGGTCATGCTTGGACAAAAGCTTTGCTT 1140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 GATGAAATACAAATGATGGCAGATCCTAGTAGAGGTCACGCTTGGACAAAAGCTTTGCTT 1140
Query 1141 GGATTAAAAGCTGATGAGATTCATTTGTGTGGAGACCCGAGTGTTTTGGATATTGTGCGT 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GGATTAAAAGCTGATGAGATTCATTTGTGTGGAGATCCGAGTGTTTTGGATATTGTGCGT 1200
Query 1201 AAGATGTGTGCTGATACAGGGGACGAGTTAGTTGAAGAGCATTACGAGAGGTTCAAACCG 1260
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1201 AAGATGTGTGCTGATACAGGGGACGAGTTAGTGGAAGAGCATTATGAAAGGTTCAAACCG 1260
Query 1261 TTAGTCGTAGAAGCGAAGACCTTATTAGGAGATCTTAAAAATGTTAAGTCTGGGGATTGC 1320
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1261 TTAGTCGTAGAAGCGAAGACCTTATTAGGAGAGCTTAAAAATGTTAAGTCTGGGGATTGT 1320
Query 1321 GTTGTTGCATTCTCTAGAAGAGAGATATTTGAAGTTAAAATGGCTATCGAGAAACATACA 1380
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GTTGTTGCGTTCTCTAGAAGAGAGATATTTGAAGTTAAAATGGCTATCGAGAAACATACA 1380
Query 1381 AATCATCGATGTTGTGTTATTTACGGTGCATTGCCGCCTGAGACAAGGAGACAGCAAGCT 1440
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1381 AATCATCGTTGTTGTGTTATTTACGGTGCATTGCCTCCTGAGACAAGGAGACAGCAAGCT 1440
Query 1441 AATCTGTTTAATGATCAAGAAAACGAGTATGATGTTTTGGTTGCAAGCGATGCTGTTGGA 1500
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1441 AAGCTGTTTAATGATCAAGAAAACGAGTATGATGTTTTGGTTGCAAGTGATGCCGTTGGA 1500
Query 1501 ATGGGATTGAATCTTAACATAAGACGGGTTGTGTTTTACAGTTTGAACAAGTACAACGGC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATGGGATTGAATCTTAACATAAGACGGGTTGTGTTTTACAGTTTGAACAAGTACAACGGC 1560
Query 1561 GATAAGATTGTTCCAGTTGCAGCGTCACAGGTAAAACAGATTGCCGGGAGAGCTGGAAGG 1620
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GATAAGATCGTTCCAGTTGCAGCGTCACAGGTAAAACAGATTGCCGGGAGAGCTGGAAGG 1620
Query 1621 AGAGGAAGCCGTTACCCAGATGGACTTACAACGACATTGCACTTAGAAGATCTAAACTAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AGAGGAAGCCGTTACCCAGATGGACTTACAACGACATTGCACTTAGAAGATCTAAACTAT 1680
Query 1681 CTAATAGAGTGTTTGCAACAACCGTTTGATGAAGTTACAAAAGTAGGGCTTTTCCCTTTC 1740
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1681 CTAATCGAGTGTTTGCAACAACCGTTTGATGAAGTAACAAAAGTAGGGCTTTTCCCTTTC 1740
Query 1741 TTTGAACAGATTGAGCTTTTCGCTGCACAAGTTCCCGATATGGCCTTTTCAAAACTCTTA 1800
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1741 TTCGAACAGATTGAGCTTTTCGCTGCACAAGTTCCCGACATGGCCTTTTCAAATCTCTTA 1800
Query 1801 GATCATTTTGGAAAACACTGCAGACTCGACGGTTCTTACTTCTTGTGCCGTCATGATCAT 1860
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GAGCATTTTGGAAAACACTGCAGACTCGACGGTTCTTACTTCTTGTGCCGTCATGATCAT 1860
Query 1861 GTAAAGAAAGTAGCAAACATGTTGGAGAAAGTACAGGGACTGTCTCTAGAAGACCGGTTT 1920
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1861 GTGAAGAAAGTAGCAAACATGTTGGAGAAAGTAGAGGGACTGTCTCTAGAAGACCGGTTT 1920
Query 1921 AACTTCTGTTTTGCACCGGTCAATATCAGGAATCCGAAAGCAATGTACCAGTTGTATCGA 1980
|||||||||||||||||||| |||||||||||||||| ||| ||| || | | ||||||
Sbjct 1921 AACTTCTGTTTTGCACCGGTTAATATCAGGAATCCGAGAGCGATGCACAACCTATATCGA 1980
Query 1981 TTTGCTTCAACATATAGCCAAGACACGCCGGTTAATATAGCAATGGGGGTACCGAAGAGT 2040
|||||||||| ||||||||| | | |||||||||| ||||||||||| |||| ||||||
Sbjct 1981 TTTGCTTCAAGTTATAGCCAAAATATGCCGGTTAATGTAGCAATGGGGATACCAAAGAGT 2040
Query 2041 TCTGCTAAGAACGATACCGAGCTGTTGGATTTGGAAAGTAGACACCAAATATTGTCTATG 2100
|||||||||| |||| || |||| ||||||||||||||||||||||| || |||||||||
Sbjct 2041 TCTGCTAAGAGCGATGCCCAGCTATTGGATTTGGAAAGTAGACACCAGATTTTGTCTATG 2100
Query 2101 TATCTTTGGTTATCTAACCAATTTGAAGAGAAGAATTTCCCATTTGTGGAGAGGGTTGAA 2160
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 2101 TATCTTTGGTTATCTAACCAATTTGAAGAGAAC--TT-CCCATTTGTGGAGAAGGTTGAA 2157
Query 2161 GCAATGGCGACAAATGTTGCAGAGTTGTTAGGTGAATCGTTGAGTAAAGCTTCTTGgaag 2220
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 GCAATGGCGACAAACATTGCAGAGTTGTTAGGTGAATCGTTGAGTAAAGCTTCTTGGAAG 2217
Query 2221 atggagtcaaaagaagagaaagtgaaaggtcaaaagaaggaagatagaggatatgaaaga 2280
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2218 ATGGAGTCAAAAGAAGAGAAAGTGAAAGGTCAAATGAAGGAAGATAGAGGATATGAAAGA 2277
Query 2281 CCAGCTTCATTAATCAAGTTAGTTAATAAGCGAAAAGAAGAGAATTTGGTGTGA 2334
|||||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 2278 CCAGCTTCGTTAATAAAGTTAGTTAAGAAGCGGAAAGACGAGAAATTGGTGTGA 2331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115862857860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5