BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356074
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39310.1 | Symbols: ATEXPA24, EXP24, ATEXP24, ATHEXP ALPHA 1... 1315 0.0
> AT5G39310.1 | Symbols: ATEXPA24, EXP24, ATEXP24, ATHEXP ALPHA
1.19, EXPA24 | expansin A24 | chr5:15739280-15740514 REVERSE
LENGTH=891
Length=891
Score = 1315 bits (712), Expect = 0.0
Identities = 837/896 (93%), Gaps = 13/896 (1%)
Strand=Plus/Plus
Query 49 ATGGTGATATGGATAGCACCTATGACAT-ACGGTCATGGTCATGCAACCCACGTACCCGG 107
|||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct 1 ATGGTGATATGGATTGCACCTATGAC-TAACGGTCATGATCATGCAAGCCACGTACCCGG 59
Query 108 TGGAAGAACC-G-GCCCACCCATGAC-TGGTGCCCACCCTTCCCATGGTGCCCACCCTTC 164
||||||| || | |||||||||| | ||| |||||||| ||||||| |||||||| ||
Sbjct 60 TGGAAGACCCGGTGCCCACCCATCCCATGGCGCCCACCCAGCCCATGGCGCCCACCCATC 119
Query 165 CCATGGCGtc-cacccatcccatggct-cccaaccttcccatggcgcccacccatcccat 222
|||||| | | |||||||||||||| | |||| || |||||||| || ||||||||||||
Sbjct 120 CCATGGTG-CTCACCCATCCCATGG-TGCCCACCCATCCCATGGTGCTCACCCATCCCAT 177
Query 223 ggcgcccat-ccatcccatggcGGCCTTGGGCCGCATTCTGGTTGGGGTCATGGCCGTGC 281
||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 178 GGCGCCC-TCCCATCCCATGGTGGCCAAGTGCCGCATTCTGGTTGGGGTCATGGCCGTGC 236
Query 282 CACATTTTACGGTGACATCAATGGTGGAGAAACTCAACAGGGAGCTTGTGGATATGGTGA 341
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CACATTCTACGGTGACATCAATGGTGGAGAAACTCAACAGGGAGCTTGTGGATATGGTGA 296
Query 342 TCTACACAAACAAGGATATGGTCTAGAGACAGCAGCACTAAGCACCGCACTATTTAACAA 401
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 TCTACACAAACAAGGATATGGTCTAGAGACCGCAGCACTAAGCACCGCACTATTTAACAA 356
Query 402 CGGCTCAAGGTGTGGGGCTTGTTTCGAGATCAAGTGCGTAGATGCTCCACAATGGTGTTT 461
||||||||||||||||||||||| |||||||| ||||| | | |||||||||||||||||
Sbjct 357 CGGCTCAAGGTGTGGGGCTTGTTACGAGATCATGTGCGAACACGCTCCACAATGGTGTTT 416
Query 462 GCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTTCT-CCAAGCCCA 520
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 417 GCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTT-TACCAAGCCCA 475
Query 521 AAGACTGTTGGTGCAACCCGCCACAAAAACACTTTGATCTCTCGCAACCAATGTTCCTCA 580
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGACAATTGGTGCAACCCGCCACAAAAACACTTTGATCTCTCGCAACCAATGTTCCTCA 535
Query 581 AAATTGCCAAATACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTCCTTGTGCGA 640
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAATAGCTAAATACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTCCTTGTGCGA 595
Query 641 AAATCGGAGGTGTCAAGTTTGAAATCAAGGGAAACCCTCATTTCTTAATGATCTTACCGT 700
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 AAATCGGAGGTGTCAAGTTTGAAATCAAGGGAAATCCTCATTTCTTAATGATCTTACCGT 655
Query 701 ACAATGTAGGAGGAGCTGGAGATGTTAGGGCCATGCAAGTTAAGGGAACGAGGACCGAGT 760
||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||| |||
Sbjct 656 ACAATGTAGGAGGAGCTGGAGCTGTTAGGGCTATGCAAATTAAGGGAACAAGGACCCAGT 715
Query 761 GGATTGCGATGAAGAAGAATTGGGGACAGATTTGGAGCACTGGTGTTGTGTTGACCGGAC 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGATTGCGATGAAGAAGAATTGGGGACAGATTTGGAGCACTGGTGTTGTGTTGACCGGAC 775
Query 821 AATGTTTATCGTTTAGGGTTACGACAAGTGATGGAATTACGAAAGAGTTTATTGACGTTA 880
||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||| ||||
Sbjct 776 AATGTTTATCGTTTAGGCTTACCACAAGTGATGGAGTTATGAAAGAGTTTATTGATGTTA 835
Query 881 CCCCGCCGGATTGGAAATGTAATGGACAGAGTTTTGATGGAAAGATTAATTTTTAG 936
| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 CACCGCCGGACTGGAAATGTAATGGACAGAGTTTTGATGGAAAGGTTAATTTTTAG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5