BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356097
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15025.1 | Symbols: | Beta-galactosidase related protein | ... 521 5e-147
> AT2G15025.1 | Symbols: | Beta-galactosidase related protein
| chr2:6501126-6501704 REVERSE LENGTH=579
Length=579
Score = 521 bits (282), Expect = 5e-147
Identities = 476/565 (84%), Gaps = 31/565 (5%)
Strand=Plus/Plus
Query 826 ATGATCTCCTCTCTAAG-GAGAGGTGATTACCGGAACTTCTTCAATC-TTTTT-TCCATG 882
||||| | ||||||| | | ||| ||||||||| || |||||||||| ||||| ||||
Sbjct 1 ATGATTTTCTCTCTACGTG-GAGATGATTACCGAAATTTCTTCAATCATTTTTCTCCA-- 57
Query 883 TTTCCTCTGAATACCGAATCCGAGCAAGTGTTATCCTATGATTATAAGGTTGATATTCAT 942
||||| |||||||| ||||| ||||| |||||| || | |||| ||||||||||||||||
Sbjct 58 TTTCCGCTGAATACTGAATCTGAGCATGTGTTACCCAACGATTTTAAGGTTGATATTCAT 117
Query 943 GAAATCAAAGGTTGGAGGAACTTTGGCATTATGA-TCCCGTTCCCATGGAACGGTGGTTA 1001
||||||||||||| |||||||| ||| ||||||| ||| | | ||||||| ||||| |||
Sbjct 118 GAAATCAAAGGTTTGAGGAACTATGGAATTATGAGTCCTGCT-CCATGGAGCGGTGCTTA 176
Query 1002 CCAAAGCTTCCTCAACTTTTTACCTCCGAACCCGCCCGACGACAGAACCAGTTTAACTTC 1061
|||||||||||| |||| |||||| | ||||||||| | || || || |||||| ||
Sbjct 177 CCAAAGCTTCCTTAACTCCTTACCTTCAAACCCGCCC-A--AC--AA-CACTTTAACCTC 230
Query 1062 TCTCCTTGCT-GATGAGCAAATCCAGCTCGCTATACTCGTGCCGGCGAGAACCTCGGCTA 1120
|||||||| | |||||||||| ||||||||| | ||||||||||||||||||||| |||
Sbjct 231 TCTCCTTG-TCGATGAGCAAACCCAGCTCGC--T-CTCGTGCCGGCGAGAACCTCGACTA 286
Query 1121 TGGAACCCTATTCAACGTCACTTAGTCTATTGACCGTGACCATTGTATCGTCTAACGCTT 1180
||||| | | |||||||||||||||||| ||||||||| ||||||| |||||||||| ||
Sbjct 287 TGGAATCGTTTTCAACGTCACTTAGTCTTTTGACCGTGGCCATTGTTTCGTCTAACG-TT 345
Query 1181 C-GT-TCGTGGATGA-TTCTTCGACAAACCGTGTTATCACTTGCACCAATTTGCTTCATT 1237
| || | || ||||| || ||||||||||||||||| |||||||||||||| |||| ||
Sbjct 346 CCGTAT-GTAGATGACTT-TTCGACAAACCGTGTTACCACTTGCACCAATTCGCTTTATA 403
Query 1238 CCTTTGGCCTCCAAGCTCTCATGGATCCTTTATCGAATTA-CTTTTGCTATCTTTGTGTA 1296
||||||| ||||| |||||||||||||||| ||||| || ||||| || ||||| ||||
Sbjct 404 GCTTTGGCTTCCAAACTCTCATGGATCCTTTGTCGAACTATCTTTT-CTTTCTTTATGTA 462
Query 1297 GCATTTGCTTTAACCTTTGTTTGTTGTTGCTACTTCTTTTTAAGCCTTCTTATCCTTGTA 1356
|||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||| |||||
Sbjct 463 GCATTTGCTTCAACCTTTGTCTGTTGTTGCTATTTCGCTTTAAGCCTTGTTATCTTTGTA 522
Query 1357 -CATTTGGCTACTT-TGAACCTTGT 1379
| || |||||| | ||||||||
Sbjct 523 TCCTTAA-CTACTTGT-AACCTTGT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5