BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356106
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38820.1 | Symbols: | Transmembrane amino acid transporter ... 2189 0.0
AT3G30390.1 | Symbols: | Transmembrane amino acid transporter ... 992 0.0
> AT5G38820.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr5:15543481-15545182 FORWARD LENGTH=1371
Length=1371
Score = 2189 bits (1185), Expect = 0.0
Identities = 1309/1371 (95%), Gaps = 0/1371 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATTTAGACGAAATCCGTACCGATATTGTAGAAGGTAGTGCTCCATTGTTGCAA 60
||||||||| |||| |||||||||||||||||||| ||| || |||||| |||||||||
Sbjct 1 ATGGAGAATCTAGATGAAATCCGTACCGATATTGTCGAATCTACTGCTCCGTTGTTGCAA 60
Query 61 GAATCATCATCAGAGAGCGACGGAGGAGGAGAATTCAACGGAGCTTCGTTTAGTGGAGCG 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GAATCATCATCAGAGAGCAACGGAGGAGGAGAATTCAACGGAGCTTCGTTTAGTGGTGCG 120
Query 121 GTTTTCAATCTCGCTACAACGATCATCGGTGCTGGTATAATGGCATTGCCTGCGACGATG 180
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 GTTTTCAATCTCGCTACAACGATCATCGGAGCTGGTATCATGGCATTGCCTGCGACGATG 180
Query 181 AAGATCCTCGGTCTTATCCCCGGAATCGCGATGATTGTTCTTATGGCTTTCTTGACCGAT 240
||||||||||||||||| ||||||||| |||| || ||||| ||||||||||| ||||||
Sbjct 181 AAGATCCTCGGTCTTATTCCCGGAATCACGATCATCGTTCTCATGGCTTTCTTAACCGAT 240
Query 241 GCTTCGATTGAGTTCTTGCTTAGGTTTAGTAACATAGGGAATCAAAGATCTTATGGTGGT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 GCTTCGATTGAGTTCTTGCTTAGGTTTAGTAACATTGGGAATCAAAGATCTTACGGTGGT 300
Query 301 GTTATGGATGATTCTTTTGGTAAATGTGGAAGGATTTTGTTACAAGTTTCGATTCTTGTT 360
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 301 GTTATGGATGATTCTTTTGGTAAATGTGGAAGGATTATGTTGCAAGTTTCGATTCTCGTT 360
Query 361 AGCAACATCGGTGTTTTGATCGTTTATATGATCATTATTGGTGATGTTTTGGCTGGTAAG 420
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AGCAACATTGGTGTTTTGATCGTTTATATGATCATCATTGGTGATGTTTTGGCTGGTAAG 420
Query 421 AATGAATATGGAATCCATCATGCTGGTATGCTTGAAGGATGGTTTGGGATTAATTGGTGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 AATGAATATGGAATCCATCATGCTGGTATGCTTGAAGGATGGTTTGGGATTAGTTGGTGG 480
Query 481 AATAGAAGAACTTTTGTTCTTCTCGTTACTACTCTCATTGTGTTTGCTCCATTGACTTGC 540
|| |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 481 AACAGAAGAACTTTTGTTCTTCTTGTTACTACTCTCACTGTCTTTGCTCCATTGACTTGC 540
Query 541 TTCAAGCGGATTGATTCTTTGAGATTCACATCTGCTGTATCGGTTGCTTTAGCGGTTGTT 600
||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 541 TTCAAACGAATTGATTCTTTGAGATTCACATCTGCTATATCAGTTGCTTTAGCGGTTGTT 600
Query 601 TTTCTTGTCATTACTGCGGGAATTACTATCGTAAAGCTGTTTACTGATGGTTTGATGATG 660
||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 601 TTTCTTGTCATCACTGCTGGAATTACTATCATTAAGCTGTTTACTGATGGTTTGATGATG 660
Query 661 CCAAGACTTTTACCTAATGTCACTGACTTGTCGTCGGTTTGGAAACTCTTCACGGTTGTT 720
|| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 CCGAGACTTCTACCTAATGTCACTGACTTGTCGTCGTTTTGGAAACTCTTCACGGTTGTT 720
Query 721 CCTGTGCTTGTCAATGCATACATTTGTCATTACAATGTTCACAGTATACAGAACGAGCTT 780
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 721 CCTGTGCTTGTCAATGCATACATTTGCCATTACAATGTTCATAGTATACAGAACGAGCTT 780
Query 781 GAAGATCCTTCTCGGATAAAACCAGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTT 840
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGACCCTTCTCGGATAAAACCTGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTT 840
Query 841 TACGTTATGACGAGCTTATTCGGATACCTTTTATTCGGTGATGCTACTCTCGATGATGTT 900
|||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 841 TACGTTATGACGAGTTTATTCGGATACCTCTTATTCGGTGATGGTACTCTTGATGATGTT 900
Query 901 CTTGCAAACTTTGACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTTGCAAACTTTGACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTG 960
Query 961 AGATTTAGCTATGCAGCTCATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGG 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGATTTAGCTACGCAGCTCATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGG 1020
Query 1021 ATTAACATTGACGGTCTCATTTTTCCTACGGCTCCACCACTTACTTCCTCTGGGTCTGAT 1080
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 ATTAACATCGACGGTCTCATCTTTCCTACGGCTCCACCACTTACTTCCTCTGAGTCTGAT 1080
Query 1081 CTGAGGTTTGGCTCTATCACTGCTGGTCTCATCGCTGTAATCTTCTTGGGAGCAAACTTC 1140
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 CTGAGGTTTGGCTCTATTACTGCTGGTCTCATTGCTGTAATCTTCTTGGGAGCAAACTTC 1140
Query 1141 ATTCCAAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCTGCTGTCTGCATCGGT 1200
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1141 ATACCAAGCATTTGGGATGCTTTCCAATTTACTGGAGCAACTGCTGCTGTCTGCATCGGT 1200
Query 1201 TTCATATTCCCTGCTGCTGTTATCTTGAAGGATCGTCATAACCAAGCAACAAAGCGGGAC 1260
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1201 TTCATATTCCCTGCTGCTGTTATCTTAAAGGATCGTCATAACCAAGCAACCAAGCGAGAC 1260
Query 1261 AAGACTATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAACGCAATCGCCATTTAC 1320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 AAGACTATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAATGCAATCGCCATTTAC 1320
Query 1321 AGTGACGCCTACGCCTTATTCAAGAAGAACACATACGTATATCCAATATGA 1371
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1321 AGTGACGCCTACGCCTTATTCAAGAAGCACACATACGTATATCCAATATGA 1371
> AT3G30390.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:11976837-11979621 REVERSE LENGTH=1937
Length=1937
Score = 992 bits (537), Expect = 0.0
Identities = 1047/1287 (81%), Gaps = 60/1287 (5%)
Strand=Plus/Plus
Query 91 GAATTCAACGGAGCTTCGTTTAGTGGAGCGGTTTTCAATCTCGCTACAACGATCATCGGT 150
|||||||| |||||||| |||||||| |||||||| || ||||| || || || || |||
Sbjct 394 GAATTCAATGGAGCTTCTTTTAGTGGCGCGGTTTTTAACCTCGCCACGACTATAATTGGT 453
Query 151 GCTGGTATAATGGCATTGCCTGCGACGATGAAGATCCTCGGTCTTATCCCCGGAATCGCG 210
|||||||| ||||| |||||||| || |||||||| || || ||| | |||||| ||
Sbjct 454 GCTGGTATCATGGCTTTGCCTGCTACAATGAAGATTCTTGGACTTGGACTTGGAATCACG 513
Query 211 ATGATTGTTCTTATGGCTTTCTTGACCGATGCTTCGATTGAGTTCTTGCTTAGGTTTAGT 270
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 514 ATGATTGTTGTTATGGCTTTCTTGACTGATGCGTCGATTGAGTTCTTGCTTAGGTTTAGT 573
Query 271 -AA-CATAGGGAATCAA-AGATCTTATGGTGGTGTT-ATGGATGATTCTTTTGGTAAAT- 325
|| | | ||||| || ||||||| |||||| || |||| || |||||||||| |||
Sbjct 574 AAAGC-T-GGGAA-GAATCGATCTTACGGTGGT-TTAATGGGTGGTTCTTTTGGT-AATC 628
Query 326 GTGGAAGGATTTTG-TTACAAGTTTCGATTCTT-GTTAGCAACATCGGTGTTTTGATCGT 383
||||||||||||| || ||||| || || || |||| ||||||||||||||||| ||
Sbjct 629 CTGGAAGGATTTTGCTT-CAAGTCGCGGTT-TTAGTTAATAACATCGGTGTTTTGATTGT 686
Query 384 TTATATGATCATTATTGGTGATGTTTTGGCTGGTAAGAATGAATATGGAATCCATCA-TG 442
|| ||||||||||| |||||||| |||||||| |||| ||| |||| |||||||| |
Sbjct 687 ATACATGATCATTATAGGTGATGTGTTGGCTGGAAAGACGGAAGATGGTATCCATCATTT 746
Query 443 CTGGTATGCTTGAAGGATGGTTTGGGATTA--ATTGGTGGAATAGAAGAACTTTTGTTCT 500
| ||| | || |||||||||||| || | | ||||||||||| ||||| || | ||||
Sbjct 747 C-GGTGTTCTCGAAGGATGGTTT-GG-TCACCATTGGTGGAATGGAAGAGCTGCTATTCT 803
Query 501 TCTCG-TTACTACTCTCATTGTGTTTGCTCCATTGACTTGCTTCAAGCGGATTGATTCTT 559
||| | |||||||||| |||||||||||||||| ||||||||||||| || |||||||
Sbjct 804 TCT-GATTACTACTCTTGGTGTGTTTGCTCCATTGGCTTGCTTCAAGCGAATCGATTCTT 862
Query 560 TGAGATTCACATCTG-CTGTATCGGTTGCTTTAGCGGTTGTTTTTCTTGTCATTACTGCG 618
||| ||| ||||| | || |||| || ||| | |||||||| ||||| | |||||||||
Sbjct 863 TGAAATTTACATCGGCCT-TATCCGTGGCTCTGGCGGTTGTGTTTCTCATTATTACTGCG 921
Query 619 GGAATTACTATCGTAAAGCTGTTTACTGATGGTTTGATGATGCCAAGACTT-TTACCTA- 676
|||||| | || | ||| || | | || ||| || |||||||||| || ||||| |
Sbjct 922 GGAATTTCAATTATGAAGTTGATCAGTGGCGGTGTGGCGATGCCAAGA-TTGTTACC-AG 979
Query 677 ATGTCACTGACTTGTCGTCGGTT-TGGAAACTCTTCACGGTTGTTCCTGTGCTTGTCA-A 734
|||| |||||||| | || || ||||| |||||||| || || ||||| ||||||| |
Sbjct 980 ATGTTACTGACTTAACATC-TTTCTGGAATCTCTTCACAGTCGTACCTGTTCTTGTCACA 1038
Query 735 TGCATACATTTGTCATTACAATGTTCACAGTATACAGAACGAGCTTGAAGATCCTTCTCG 794
|||| |||||| |||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1039 -GCATTCATTTGCCATTACAATGTTCACAGTATACAGAACGAGCTCGAAGACCCCTCTCA 1097
Query 795 GATAAAACCAGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTTTACGTTATGACGAG 854
||||| ||| |||||||||||||||||| | | || || ||||||||| | ||||| ||
Sbjct 1098 GATAAGACCTGTTGTTCGATCAGCACTTATGCTCTGCTCATCTGTTTACATAATGACAAG 1157
Query 855 C-TTATTCGGATACCTTTTATTCGGTGATGCTACTCTCGATGATGTTCTTGCAAACTTTG 913
|| ||||| | ||| || || ||||||| |||||| |||||||| |||||||||||||
Sbjct 1158 TATT-TTCGGGTTCCTCTTGTTTGGTGATGATACTCTTGATGATGTCCTTGCAAACTTTG 1216
Query 914 ACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTGAGATTTAGCTATG 973
|||| ||||||||||||||||||||||| | ||||||||||| || || ||||||| |
Sbjct 1217 ACACTGATCTTGGAATCCCTTTTGGTTCTATCCTTAATGATGCGGTTCGAGTTAGCTACG 1276
Query 974 CAGCT-CATCTCATGCTTGTGTTCCCTG-TTGTCTTCTATCCTCTGCGGATTAACATTGA 1031
| ||| ||| | ||||| |||||||| | |||| ||||| ||||| ||||||||||||||
Sbjct 1277 C-GCTTCATTTGATGCTCGTGTTCCC-GATTGTTTTCTACCCTCTTCGGATTAACATTGA 1334
Query 1032 CGGTCTCATTTTTCC-TACGGCTCCACCACTTA-CTTCCTCTGGGTCTGATCTGAGGTTT 1089
||| ||| || |||| | | |||| | || ||| || |||| | ||| | ||||
Sbjct 1335 CGGGCTC-TTGTTCCCTTCCGCTCGATCA-TTATCTACCTCAAA-TGTGAGGTTCGGTT- 1390
Query 1090 GGCTCTATCACTGCTGGTCTCATCGCTGTAATCTTCTTGGGAGCAAACTTCATTCCAAGC 1149
| | || |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 1391 G-C-CT--CACTGCCGGTCTCATCTCTGTAATCTTCTTGGGTGCAAACTTCATCCCAAGC 1446
Query 1150 ATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCTGCTGTCTG-CATCGGTTTCATATT 1208
||||||||||||||||||||||||||||||||||| ||||| || | |||| ||||| ||
Sbjct 1447 ATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCCGCTGTTTGTC-TCGGCTTCATCTT 1505
Query 1209 CCCTGCTGCTGTTAT-CTTGAAGGATCGTCATAACCAAGCAACAAAGC-GGGACA-AGAC 1265
||| ||| || | || || |||||||||||| || |||||||||| | |||||| | ||
Sbjct 1506 CCCAGCTTCTATCATACTA-AAGGATCGTCATGACAAAGCAACAAA-CAGGGACACA-AC 1562
Query 1266 -TATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAACGCAATCGCCATTTACAGTG 1324
| |||| |||| |||||| || |||||||| || ||||| ||||||||||||||||| |
Sbjct 1563 CT-TAGCTATTTTCATGATTGTTCTTGCGGTATTGTCCAATGCAATCGCCATTTACAGCG 1621
Query 1325 ACGCCTACGC-CTTATTCAAGAAGAAC 1350
| || || || || |||||||||||||
Sbjct 1622 ATGCTTATGCGCT-ATTCAAGAAGAAC 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5