BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356111
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2632 0.0
> AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:15510901-15512691 FORWARD LENGTH=1791
Length=1791
Score = 2632 bits (1425), Expect = 0.0
Identities = 1626/1726 (94%), Gaps = 2/1726 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAATTTGTTGTCTGCAAATCGTGAAGCTTTGATTGCACAAAGCATCTGTGCAACT 60
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAATTTGTTGTCAGCAAATCGAGAAGCTTTGATTGCACAAAGCATCTGTGCAACA 60
Query 61 GTATTGAAAGGAAACTGGAAAAATATTCTGAAACACAAAGTTGATTCTGGGTTATTGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTATTGAAAGGAAACTGGAAAAATATTCTGAAACACAAAGTTGATTCTGGGTTATTGAAA 120
Query 121 TCATCGATAATCACTCAGGTAATCTCCGAGCTTTCTCTGTATTCTGGTTATGGTGGACCT 180
||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 121 TCAGCGATAACCACTCAGGTAATCTCTGAGCTTTCTCTGTTTTCTGGTTATGGTGGACCT 180
Query 181 TCTCTTTCATGGAGTTTCTATAGCTGGACTGATTCGTTACCAAGTTGCAAGCATAGTTTA 240
||||||||||||||||||| || |||||| ||||| ||||||||| |||| |||||||||
Sbjct 181 TCTCTTTCATGGAGTTTCTTTATCTGGACCGATTCTTTACCAAGTAGCAAACATAGTTTA 240
Query 241 CAATCATCATGGAAAATGATTTTGATTCTCACAAAACACAATCATTTCAAAACTGCACAC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CAATCATCATGGAAAATGATTTTGATTCTCACAAAACACAAGCATTTCAAAACTGCACAC 300
Query 301 CAACTGCTCGATAAATTGTCTCAGAGAGAGCTTTTGTCATCTCCTTTGGTTTTGAGATCT 360
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CAACTGCTCGATAAATTGGCTCAGAGAGAGCTTTTGTCATCTCCTCTGGTTTTGAGATCT 360
Query 361 TTAGTTGGTGGTGTTTCTGAAGACCCAGAAGTTTTATCTCACGTTTTTAGCTGGTTGATG 420
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 361 TTAGTTGGTGGTGTTTCTGAAGACCCAGAAGATGTATCTCACGTCTTTAGCTGGTTGATG 420
Query 421 ATATTTTATGCGAAATCCGGGATGATCAACGATTCGATTGCGGTGTTTGAGCAGATTATG 480
|||| ||| || ||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 421 ATATATTACGCTAAAGCCGGGATGATCAACGATTCGATTGTGGTGTTTGAGCAGATTAGG 480
Query 481 AGTTGTGGATTGAAGCCTCATTTGCAGGCTTGTACTGTGTTACTTAATAGTTTGGTTAAA 540
|||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| | ||
Sbjct 481 AGTTGTGGATTGAAGCCTCATTTGCAAGCTTGTACTGTGTTACTAAATAGTCTGG-TGAA 539
Query 541 G-AGAGATTGACTGATACAGTTTGGAAGATTTTCAAGAAGATGGTTAAGTTAGGTGTTGT 599
| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GCAGAGATTGACTGATACTGTTTGGAAGATATTCAAGAAGATGGTTAAGTTAGGTGTTGT 599
Query 600 GGCTAACATTCATGTGTATAATGTATTGGTTCATGCTTGTTCTAAGTCCGGTGATTCCGA 659
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 600 TGCTAACATTCATGTGTATAATGTATTGGTTCATGCTTGTTCTAAGTCTGGTGATCCCGA 659
Query 660 GAAAGCCGAGAAATTGTTAAGTGAGATGGAAGAAAAAGGCGTGTTTCCTGATATTTTTAC 719
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 660 GAAAGCTGAGAAATTGTTGAGTGAGATGGAAGAAAAAGGTGTGTTTCCTGATATCTTTAC 719
Query 720 CTATAATACGTTGATCTCTGTGTACTGCaaaaaaaGTATGCATTTCGAGGCTTTATCCGT 779
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 720 CTATAACACGTTGATCTCTGTGTACTGCAAAAAGAGTATGCATTTCGAGGCTTTATCTGT 779
Query 780 TCAAGATAGGATGGAGAGAAGTGGGGTTGCTCCTGATATTGTCACTTATAACTCACTCAT 839
||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||
Sbjct 780 GCAAGATAGGATGGAGAGAAGTGGTGTTGCTCCTAATATTGTCACTTATAATTCATTCAT 839
Query 840 ACATGGGTTTAGTAGAGAAGGTAGAATGAGGGAGGCGACTAGGCTTTTTCGGAAGATCAA 899
|||||||||||||||||||||||||||||| ||||| || || || |||||| |||| ||
Sbjct 840 ACATGGGTTTAGTAGAGAAGGTAGAATGAGAGAGGCCACAAGACTGTTTCGGGAGATTAA 899
Query 900 AGGCGTTGTGATGGCGAACCATGTTACTTATACTACTTTGATTGATGGATATTGTAGAAT 959
|| || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGACGATGTTACAGCGAATCATGTTACTTATACTACTTTGATTGATGGATATTGTAGAAT 959
Query 960 GAATGATATAGATGAAGCTTTGAGGTTACGAGAGGTAATGGAGGCAAGAGGGTTTTGTCC 1019
||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 960 GAATGATATTGATGAAGCTTTGAGGTTACGTGAGGTAATGGAGTCAAGAGGGTTTTCTCC 1019
Query 1020 TGGAGTTGTGACGTACAACTCCATTTTGCGTAAGTTATGTGAAGATGGAAGAATAAGAGA 1079
|||||||||||| || || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGAGTTGTGACATATAATTCGATTTTGCGTAAGTTATGTGAAGATGGAAGAATAAGAGA 1079
Query 1080 AGCTAACCGGCTTTTGACTGAGATGAGTGTAAAAAAGATAGAACCTGATAATATCACCTG 1139
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1080 AGCTAACCGGCTTTTGACTGAGATGAGTGGAAAAAAGATTGAACCTGATAATATCACCTG 1139
Query 1140 CAATACTTTGATCAACGCATATTGCAAAATTGAAGACATGGTATCTGCAGTGAAGGTAAA 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1140 CAATACTTTGATCAACGCATATTGCAAAATCGAAGACATGGTATCTGCAGTGAAGGTCAA 1199
Query 1200 GAAGAAGATGATTGAATCGGGGCTAAAACTTGACATGTATTCATATAAAGCATTGATTCA 1259
|||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1200 GAAGAAGATGATTGAATCAGGGCTAAAACTGGATATGTATTCATACAAAGCATTGATTCA 1259
Query 1260 CGGGTTTTGTAAAGTGTTGGAACTGGACAATGCAAAGGAGGAACTGTTCTCTATGATAGA 1319
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 TGGGTTTTGTAAAGTGTTGGAACTGGAAAATGCAAAGGAGGAACTGTTCTCTATGATAGA 1319
Query 1320 GAAAGGCTTATCTCCAGGATATTCGGCTTATTCTTGGCTTGTGGATGGATTCTATAACCA 1379
||||||||| ||||| |||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 1320 GAAAGGCTTCTCTCCTGGATATGCGACCTATTCTTGGCTCGTGGATGGATTCTATAACCA 1379
Query 1380 GAACAAGCAAGACGAAATCACAAAACTCCCAGAGGAGTTTGAAAAAAGAGGTCTTTGCCC 1439
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1380 GAACAAGCAAGACGAAATCACAAAACTCCTAGAGGAGTTTGAAAAAAGAGGTCTTTGTGC 1439
Query 1440 TGATGTTGCTCTATACAGAGGATTAATAAGAAGGATTTGTAAGTTAGAACAGGTGGATTA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGATGTTGCTCTATACAGAGGATTAATAAGAAGGATTTGTAAGTTAGAACAGGTGGATTA 1499
Query 1500 CGCCAAAGTGTTGTTTGAGTCAATGGAAAAGAAGGGTTTAATGGGAGATAGTGTTATATA 1559
|||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1500 CGCCAAAGTGTTATTTGAATCAATGGAAAAGAAGGGTTTAGTGGGAGATAGTGTTATATT 1559
Query 1560 CACGACAATGGCGTATGCATATTGGCGAACAGGGAAGGTCACTGAAGCTTCTGCTCTGTT 1619
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1560 CACGACCATGGCGTATGCATATTGGCGAACAGGGAAGGTCACTGAAGCTTCTGCTTTGTT 1619
Query 1620 CGATGTAATGTATAATCGACGGTTGATGGTGAACTTGAAACTGTATAAATCCCTCAGTGC 1679
|||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 1620 CGATGTAATGTATAATCGACGGTTAATGGTAAACTTGAAACTTTATAAATCTATCAGTGC 1679
Query 1680 CTCGTACGCTGGTGATAACGATGTTTTGAGATTCTTTTGGAGTCAT 1725
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTCTTACGCTGGTGATAACGATGTTTTGAGATTCTTTTGGAGTCAT 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5