BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356132
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38520.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 736 0.0
> AT5G38520.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:15421573-15423431 FORWARD LENGTH=1354
Length=1354
Score = 736 bits (398), Expect = 0.0
Identities = 487/530 (92%), Gaps = 6/530 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGCTCTAACATGGACGGGAATGTCACCGCCGTCAATGATGGTGTCACAAACAGCG 60
|||||||||||||||||||||| |||||| |||||| | || |||||| || |||
Sbjct 33 ATGAGAGCTCTAACATGGACGGCAATGTCGCCGCCG-----G-TGATGTCACGGACGGCG 86
Query 61 ACTTCTACGGTTAACATACAACGTATCAGCCTCCGGAGAGATCTCGTCTGTGTTAGAGCC 120
||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 87 ACTTCTACGGTTAACTTACGACGTATCAGCCTACGGAGAGATCGCGTCTGTGTTAGAGCC 146
Query 121 ACTGCGTCGGCGAGCACGGCGGTTTCAGGTGGAGGAGTAGTAGAGGCAGTAGAACTGGTA 180
|| || ||| | ||| | ||||||| || ||||||||||||||||| |||||| ||| |
Sbjct 147 ACGGCTTCGTCTAGCGCCACGGTTTCCGGCGGAGGAGTAGTAGAGGCGGTAGAATTGGCA 206
Query 181 GAGATAGGAGAGAGAAGTAAGAAATGGAAGTGGAAAGGAGAATATTCTGTTAATTACTTT 240
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 207 GAGATAGGAGAAAGAAGCAAGAAATGGAAGTGGAAAGGAGAATATTCTGTTAACTACTTT 266
Query 241 GTCAAAGATTCGCCGGAGGAAGTTACTCCGGCGAGTCAAACTGTTCTTTTGGTTCATGGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GTCAAAGATTCGCCGGAGGAAGTTACTCCGGCGAGTCAAACTGTTCTTTTGGTTCATGGC 326
Query 301 TTTGGTGCTTCAATTCCTCACTGGAGAAGGAACATAAATGCTCTGTCCAAAAACCATACA 360
||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 327 TTTGGTGCTTCTATTCCTCACTGGCGAAGGAACATAAATGCTTTGTCTAAAAACCATACA 386
Query 361 GTGTATGCAATTGATCTTCTTGGATTTGGTGCTTCGGATAAGCCTCCTGGTTTTAGCTAT 420
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 387 GTGTATGCAATTGATCTTCTCGGGTTTGGTGCTTCGGATAAGCCACCTGGTTTTAGCTAT 446
Query 421 ACCATGGAGTCATGGGCTGAATTGATAATCAACTTCTTAGAGGAAGTGGTTCAGAAACCG 480
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 447 ACCATGGAGTCATGGGCTGAGTTGATACTCAACTTCTTGGAGGAAGTGGTTCAGAAACCG 506
Query 481 ACGATTTTGATTGGAAACTCTGTTGGAAGCCTTGCTTGTGTCATTGCTGC 530
|| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 507 ACTATTTTGATTGGAAACTCTGTTGGAAGCCTTGCTTGTGTCATCGCTGC 556
Score = 634 bits (343), Expect = 0.0
Identities = 393/418 (94%), Gaps = 0/418 (0%)
Strand=Plus/Plus
Query 536 CAGAATCACAACGAGATCTGGTCAAAGGTCTTGTTCTATTGAACTGTGCTGGTGGTATGA 595
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 CAGAATCACGAGGAGATCTGGTCAAAGGTCTTGTTCTATTGAATTGTGCTGGTGGTATGA 654
Query 596 ACAATAAAGCGGTGTTTGACGACTGGCGAATCAAGCTGCTGATGCCTTTACTCTTGCTTA 655
|||| ||||| || ||||| |||||| |||||||||| ||||||||||||||||| ||||
Sbjct 655 ACAACAAAGCTGTCTTTGATGACTGGAGAATCAAGCTACTGATGCCTTTACTCTTACTTA 714
Query 656 TCGACTTTTTACTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACA 715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCGACTTCTTACTCAAGCAAAGAGGAATTGCTTCTGCACTCTTCAACCGTGTTAAAGACA 774
Query 716 GAGAAAATCTCAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGATA 775
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 775 GGGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGACA 834
Query 776 CTCTTGTAGAGATCATTGCTGGACCAGCAAATTCCGAAGGCGCGCTAGATGCATTTGTTT 835
| |||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||
Sbjct 835 CCCTTGTAGAGATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTT 894
Query 836 CAATCTTAACGGGTCCACCTGGACCAAACCCGATTAAGCTGATACCGGAAATAACCAAAC 895
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 895 CAATCTTAACGGGTCCTCCTGGACCAAATCCGATTAAGCTGATACCGGAAATAACCAAAC 954
Query 896 CGGTTCTTGTTTTATGGGGAGACCAAGATGGACTAACCCCTCTCGACGGTCCAGTAGG 953
|||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 955 CGGTTCTTGTCTTATGGGGAGATCAAGATGGACTAACCCCTCTTGATGGTCCAGTAGG 1012
Score = 147 bits (79), Expect = 3e-34
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 951 AGGCGTTGGACATTGCCCACAAGATGATCGCCCGGATCTTGTTCATGAGCGTCTCCTTCC 1010
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1070 AGGCGTTGGACATTGCCCGCAAGATGATCGTCCGGATCTTGTCCATGAGCGTCTCCTTCC 1129
Query 1011 ATGGCTGGCTCAACTTTCTTCCACCTAG 1038
||||||||||||||||||||||||||||
Sbjct 1130 ATGGCTGGCTCAACTTTCTTCCACCTAG 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5