BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356177
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16690.1 | Symbols: ATMES16, MES16 | methyl esterase 16 | ch... 917 0.0
> AT4G16690.1 | Symbols: ATMES16, MES16 | methyl esterase 16 |
chr4:9392147-9393529 REVERSE LENGTH=1152
Length=1152
Score = 917 bits (496), Expect = 0.0
Identities = 696/794 (88%), Gaps = 7/794 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGGAGACAGTGGTGAAGATGATCCCATAATTCACTTTGTGTTTGTTCATGGGGCT 60
||||||||||| | |||| | ||| ||| ||||||||||||||||||||||||| ||
Sbjct 106 ATGGGAGGAGA-A--GGTGGTGCTGAGCCCGTAATTCACTTTGTGTTTGTTCATGGAGCC 162
Query 61 AGTCACGGAGCTTGGTGTTGGTATAAAATCATCACTCTTCTAGACGCGGCCGGATTCAAA 120
||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||| ||||||
Sbjct 163 AGTCACGGAGCTTGGTGTTGGTATAAACTCACCACTCTTCTCGACGCCGCCGGGTTCAAA 222
Query 121 TCCTCCACTGTCGACCTCACCGGTGCTGGCATCAGTCTCACGGACTCTAACACCGTCTTC 180
|| || | || || |||||||| ||||||||||| |||| |||||||||| |||||||
Sbjct 223 TCAACCTCCGTAGATCTCACCGGCGCTGGCATCAGCCTCATAGACTCTAACATCGTCTTC 282
Query 181 CACTCTGACCAATATAACCGTCCTCTCTTTTCTCTCTTGTCCGACCTCCCTCCTTTCCAC 240
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 283 GACTCCGACCAATATAACCGTCCTCTCTTCTCTCTCTTGTCCGATCTCCCTCCTCACCAC 342
Query 241 AAAGTCATACTCGTCGGACATAGCATCGGTGGAGCAAGTGTCACCGAAGCCCTCTGCAAG 300
|||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 343 AAAGTCATACTCGTTGGACATAGCATCGGTGGAGGAAGTGTCACCGAAGCTCTTTGCAAG 402
Query 301 TTCACTGACAAAATCTCCATGGCCATTTACATCACGGCTTCCATGGTT-AAGCCCGGATC 359
|||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 403 TTCACTGACAAAATCTCCATGGCCATTTACCTCGCGGCTTCCATGGTTCAA-CCCGGATC 461
Query 360 CATCTCTTCTCCAG-ATCTTTTAAACAAACTTGAGGGATATGAAGAAATATGTGACTACA 418
|||| ||||||| | |||||| ||||| || || |||| | ||||| ||||| || ||||
Sbjct 462 CATCCCTTCTCC-GCATCTTTCAAACATACATGTGGGAGAAGAAGATATATGGGAGTACA 520
Query 419 CATTTGGTGAAGGTACCGATAAGCCACCCACTGGCTTCATCATCAAGGAGGAGTTTAGAC 478
||| |||||||||||||||||| |||||||| || || |||| || |||||||| ||
Sbjct 521 CATATGGTGAAGGTACCGATAAACCACCCACCGGAGTCCTCATGAAACCGGAGTTTATAC 580
Query 479 GCCATTATTACTATAACCAAAGCCCTCTTGAGGACATAACTCTATCATCTAAATTGTTGC 538
||||||||||||||| ||||||||||||||||||| ||||| | |||||||| ||||||
Sbjct 581 GCCATTATTACTATAGCCAAAGCCCTCTTGAGGACGTAACTTTGTCATCTAAGCTGTTGC 640
Query 539 GTCCTGCTCCTATGAGAGCCTTTCAAGATCTTGATAAGCTGCCTCCAAATCCCAAGGCCG 598
|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 641 GTCCTGCTCCTATGAGGGCCTTTCAAGATCTTGATAAGCTACCTCCAAATCCCGAGGCCG 700
Query 599 AGAATGTTCCTCGAGTGTACATCAAGACTGCTAAGGACAATATAATTGATCCTATGCGTC 658
|||| ||||||||||| |||||||||||||||||||| ||| || ||||| || ||||||
Sbjct 701 AGAAAGTTCCTCGAGTTTACATCAAGACTGCTAAGGATAATCTATTTGATTCTGTGCGTC 760
Query 659 AAGACCAAATGGTGGAGAATTGGCCAGTTTTTCATATGTATGTCTTGGAGGAGAGTGATC 718
|||||| ||||||||||||||||| || ||| |||||||||||||||| ||||| |
Sbjct 761 AAGACCTTTTGGTGGAGAATTGGCCACCTTCTCAGCTGTATGTCTTGGAGGATAGTGACC 820
Query 719 ATTCTCCTTTCTTCTCTGTGCCAACTACCTTATTCGATTATCTCCTTCATGCGGTTTCTT 778
||||| ||||||||||||| |||||||||||||||| |||||||| | |||||||||||
Sbjct 821 ATTCTGCTTTCTTCTCTGTCCCAACTACCTTATTCGCGTATCTCCTCCGTGCGGTTTCTT 880
Query 779 CTCTCCAAAGATAA 792
||| ||| |||||
Sbjct 881 TTCTTCAACGATAA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5