BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356181
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16590.1 | Symbols: LRR1 | Leucine-rich repeat protein kinas... 2627 0.0
AT3G02880.1 | Symbols: | Leucine-rich repeat protein kinase fa... 344 2e-93
> AT5G16590.1 | Symbols: LRR1 | Leucine-rich repeat protein kinase
family protein | chr5:5431681-5434134 FORWARD LENGTH=2272
Length=2272
Score = 2627 bits (1422), Expect = 0.0
Identities = 1742/1893 (92%), Gaps = 36/1893 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAACACGACCAACTTAAGct-tctctgtcttcttctttctct-tctgtctCATTT 58
|||||||||| |||||| || || | |||| ||||||||| |||| | | |||||| |||
Sbjct 182 ATGAAGAACAAGACCAA-TTTAGGTCTCTCAGTCTTCTTC-TTCTTTATATGTCTCGTTT 239
Query 59 CCGTAACATCAGATCTAGAAGCTGATCGACGAGCAT-TAATAGCTCTCCGTGATGGTGTC 117
|||| ||||||||||||||||||||||||||||| | |||| || || ||||| |||||
Sbjct 240 CCGTGACATCAGATCTAGAAGCTGATCGACGAGC-TCTAATCGCACTTCGTGACGGTGTT 298
Query 118 CATGGCCGTCCATTGCTCTGGAATTTATCAGCACCACCGTGTACTTGGGGAGGAGTCCAA 177
||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 299 CATGGGCGTCCATTGCTGTGGAATCTAACAGCACCACCGTGTACTTGGGGAGGAGTCCAA 358
Query 178 TGTGATTCGGGTCGGGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCTGGTCCATTA 237
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 TGTGAGTCGGGTCGTGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCGGGTCCATTA 418
Query 238 CCAATCGCCATCGGAAACCTAACAAAGCTCGAAACTTTATCTTTCCGATTCAATGCTCTT 297
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 419 CCAATCGCCATCGGAAACCTTACAAAGCTCGAAACTTTATCATTCCGATTCAATGCTCTT 478
Query 298 AATGGTCCTCTCCCGCCGGATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAA 357
|| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 479 AACGGTCCTCTCCCGCCGGATTTCGCAAACCTAACTCTTCTCCGTTACTTGTATCTTCAA 538
Query 358 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTTTACCAAACATTATTCGG 417
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 GGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTCTACCAAACATTATTCGG 598
Query 418 ATCAATCTCGCTCAAAACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACC 477
||||||||||| || || ||||||| ||||||||||||||||||||||||||| || |||
Sbjct 599 ATCAATCTCGCCCAGAATAATTTCTTGGGTCGGATCCCGGATAATGTCAATTCTGCAACC 658
Query 478 CGGTTAGCTACTCTTTACTTGCAGGATAATCAACTTACTGGTCCGATCCCGGAGATTAAG 537
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 659 CGGTTAGCTACTCTTTACTTGCAGGATAATCAACTCACCGGTCCAATCCCGGAGATTAAG 718
Query 538 ATTAAGCTTCAGCAGTTTAATGTCTCGTCGAATCAGTTAAACGGGTCGATTCCGGATCCG 597
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 719 ATTAAGCTTCAACAGTTTAATGTCTCATCCAATCAGTTAAACGGGTCGATTCCGGATCCG 778
Query 598 TTGTCGGGTATGCCCAAAACCGCTTTTTTAGGGAATTTGCTATGTGGGAAGCCGTTAGAT 657
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 779 TTGTCGGGTATGCCCAAAACCGCCTTTTTAGGCAATTTGCTCTGTGGGAAGCCGTTAGAT 838
Query 658 GCTTGCCCCGTCAATGG---T---AACGGCACTGTGACGCCT---CTAAAAGGGAAAAGC 708
|||||||| |||||||| | ||||| |||||||||||| |||||||||||||
Sbjct 839 GCTTGCCCTGTCAATGGCACTGGAAACGGTACTGTGACGCCTGGAGGAAAAGGGAAAAGC 898
Query 709 GACAAGTTATCTGCCGGAGCTATTGCCGGGATAGTGATCGGTTGTTTCTTAGGGCTTCTC 768
||||||||||||||||||||||||| ||| ||||||||||| |||||| | |||||||
Sbjct 899 GACAAGTTATCTGCCGGAGCTATTGTCGGAATAGTGATCGGCTGTTTCGTCTTGCTTCTC 958
Query 769 TTGTTTTTCTTGATCTTGTTCTGTCTTTGTAGAAAGAAGAAGAAAGAGGAA---GTCCGA 825
|| ||||||||||| |||||||||| ||||||||||||||||||||| || |||| |
Sbjct 959 GTGCTTTTCTTGATCGTGTTCTGTCTCTGTAGAAAGAAGAAGAAAGAGCAAGTCGTCCAA 1018
Query 826 TCGAGAAACATTGAAGCAGCTCCTATTCCGACCTCATCCGCCGCCGTAGCTAAGGAATCG 885
||||||| ||| |||||||||||| ||||||||||||| || ||||| ||||||||||
Sbjct 1019 TCGAGAAGCATCGAAGCAGCTCCTGTTCCGACCTCATCAGCAGCCGTGGCTAAGGAAT-- 1076
Query 886 GCGGTGGCCAATGGTCCTCCT-C--CGGTGGCTAATGGTGCACCACATTTAAATGGTGCA 942
| | |||||||||||| | |||||||||||||||| | | |||||||| |
Sbjct 1077 -C----G--AATGGTCCTCCTGCGGTGGTGGCTAATGGTGCA--TC-TGAAAATGGTGTA 1126
Query 943 TCAAAGAA-CC--CTGCAGTGAGTAAAGATTTGACATTTTTTGTGAAATCTTTCGGCGAG 999
|||||||| || ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1127 TCAAAGAACCCTGCTGCAGTGAGTAAAGATCTGACATTTTTCGTGAAATCTTTCGGCGAG 1186
Query 1000 TTTGATCTTGATGGATTGTTAAAAGCTTCTGCGGAAGTACTTGGTAAAGGAACATTCGGA 1059
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1187 TTTGATCTTGATGGATTGCTGAAAGCTTCTGCGGAAGTACTTGGTAAAGGAACGTTCGGA 1246
Query 1060 TCATCGTACAAGGCGAGTTTCGATAACGGATTAGTGCTTGCTGTGAAACGATTGAGAGAT 1119
|| ||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 1247 TCTTCGTACAAGGCCAGTTTCGATCACGGATTAGTGGTGGCTGTGAAACGATTGAGAGAT 1306
Query 1120 GTGGTGGTTCCTGAGAAAGAGTTTAGAGAGAAATTACAGGTTCTTGGATCCTTAAGCCAT 1179
|| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 1307 GTCGTGGTTCCTGAGAAAGAGTTCAGAGAGAAATTGCAGGTTCTTGGATCCATAAGCCAT 1366
Query 1180 CCCAATCTTGTGACATTAATCGCATATTACTTCAGCCGCGACGAAAAGCTCGTTGTTTTC 1239
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GCCAATCTTGTGACATTGATTGCATATTACTTCAGCCGCGACGAAAAGCTCGTTGTTTTC 1426
Query 1240 GAATACATGTCTAGAGGAAGCTTGTCTGCGCTTTTACACGGGAACAAAGGAAGTGGCAGA 1299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1427 GAATACATGTCTAGAGGAAGCTTGTCTGCGCTGTTACACGGGAACAAAGGAAGTGGCAGA 1486
Query 1300 AGTCCATTGAATTGGGAAACAAGAGCCGCTATAGCGTTAGGAGCCGCAAGAGCGATTAGC 1359
|||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||||
Sbjct 1487 AGTCCATTGAATTGGGAAACGAGAGCCAATATAGCATTAGGAGCCGCAAGAGCAATTAGC 1546
Query 1360 TACCTCCATTCGCGTGACGCGACAACATCTCATGGCAACATTAAATCTTCTAACATTCTC 1419
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1547 TACCTCCATTCGCGTGACGCGACAACATCTCATGGCAACATTAAATCATCTAACATTCTA 1606
Query 1420 TTGTCTGAATCCTTTGAGGCCAAGGTCTCTGATTACTGTTTTGCGCCTATGATCAGCCCT 1479
||||| ||||||||||| || ||||||||||| |||||| |||| |||||||||||||||
Sbjct 1607 TTGTCAGAATCCTTTGAAGCTAAGGTCTCTGACTACTGTCTTGCACCTATGATCAGCCCT 1666
Query 1480 ACTTCTACACCTAACCGTATTGATGGTTACCGAGCTCCTGAAGTAACCGATGCTCGTAAA 1539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 ACTTCTACACCTAACCGCATTGATGGTTACCGAGCTCCTGAAGTAACCGATGCTCGTAAA 1726
Query 1540 ATCTCTCAAAAGGCTGATGTTTATAGCTTTGGTGTTCTCATTCTTGAATTACTCACAGGG 1599
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1727 ATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATTACTCACAGGG 1786
Query 1600 AAATCTCCAACGCATCAGCAGTTACACGAAGAAGGAGTAGATTTACCGAGATGGGTTTCA 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 AAATCTCCAACGCATCAGCAGTTACACGAAGAAGGAGTAGATTTACCGAGATGGGTTTCA 1846
Query 1660 TCGATCACTGAACAACAATCACCATCAGATGTGTTTGATCCAGAGCTCACAAGGTATCAA 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TCGATCACTGAACAACAATCACCATCAGATGTGTTTGATCCAGAGCTCACAAGGTATCAA 1906
Query 1720 TCGGACATCAACGAGAACATGATCAAGCTTTTAAAGATGGGTATAAGTTGTACGGCTCAA 1779
||||||| ||| ||||||||||||| ||||||||| || ||||||||||||||| ||||
Sbjct 1907 TCGGACAGCAATGAGAACATGATCAGGCTTTTAAACATCGGTATAAGTTGTACGACTCAG 1966
Query 1780 TATCCAGATAGTCGTCCTACAATGCCTGAAGTCACAAGGCTCATCGAGGAGGTTTCTCGT 1839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1967 TATCCAGATAGTCGTCCTACAATGCCTGAAGTCACAAGACTCATCGAGGAGGTTTCTCGT 2026
Query 1840 TCACCTGCTTCACCAAGTCCTTTGTCTGATTGA 1872
||||||||||||||| |||||||||| ||||||
Sbjct 2027 TCACCTGCTTCACCAGGTCCTTTGTCCGATTGA 2059
> AT3G02880.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:634653-637284 FORWARD LENGTH=2352
Length=2352
Score = 344 bits (186), Expect = 2e-93
Identities = 501/649 (77%), Gaps = 38/649 (6%)
Strand=Plus/Plus
Query 30 tgtcttcttctttctcttctgtctCATTTCCGTAACATCAGATCTAGAAG-CTGATC-GA 87
||||||| ||||| |||||| |||| | | || || |||||||||| || |||| | ||
Sbjct 199 TGTCTTCCTCTTTGTCTTCTATCTCGCTGCGGTGACTTCAGATCTAG-AGTCTGACCGGA 257
Query 88 CGAGCATTAATAGCTCTCCGTGATGGTGTCCATGGCCGTCCATTGCTCTGGAA-TTTA-T 145
|||| ||| | ||| | ||| | |||||| ||||||||| ||||| ||||| | | |
Sbjct 258 -GAGCTTTACTCGCTGTTCGTAACAGTGTCCGTGGCCGTCCTTTGCTATGGAACATGAGT 316
Query 146 -CAGCACCACCGTGTACTTGGGGA-GGAGTCCAATGTGATTCGGGTCGGGTCACAGCACT 203
| | | || |||| || || | |||||||| || ||| ||||||||||||| || ||
Sbjct 317 GCTTCTTCTCCTTGTAATT-GGCACGGAGTCCACTGCGATGCGGGTCGGGTCACGGCTCT 375
Query 204 CCGATTACCCGG-TGTGGGTTTA-TCTGGTCCATTACCAATC---GCCATCGGAAACCTA 258
|||||||||||| | | |||||| || ||| | ||||||||| | || || || |||
Sbjct 376 CCGATTACCCGGATCT-GGTTTATTC-GGTTCTTTACCAATCGGTGGTATTGGTAATCTA 433
Query 259 ACAAAGCTCGAA-ACT-TTATCTTTCCGATTCAATGCTCT-TAATGGTCCTCTCCCGCCG 315
|| |||| || ||| || ||| |||| |||||| |||| | ||||||| |||| ||
Sbjct 434 ACCCAGCT-TAAGACTCTT-TCTCTCCGGTTCAATTCTCTCT-CTGGTCCTATCCCTTCG 490
Query 316 GATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAAGGAAACGCATTTTCCGGC 375
|||||| | ||||| ||||||||| ||||||||||||||||| || || ||||||||
Sbjct 491 GATTTCTCCAACCTTGTTCTCCTCCGTTACTTGTATCTTCAAGGTAATGCCTTTTCCGGT 550
Query 376 GAGATTCCTTCGTTTCTCTTCAC-TTTACCAAACATTATTC-GGATCAATCTCGCTCAAA 433
|||||||| ||| |||||||||| || || | || || || | |||||||| | | |
Sbjct 551 GAGATTCCGTCGCTTCTCTTCACGCTT-CCGAGCA-TAATCAGAATCAATCTAGGGGAGA 608
Query 434 ACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACCCGGTTAGCTACTCTTT 493
| || |||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct 609 ATAAATTCTCGGGTCGGATCCCGGATAATGTCAATTCTGCGACCCGGTTGGTTACTCTGT 668
Query 494 ACTTGCAG-GATAATCAACT-TACTGGTCCGATCCCGGAGATTAAGATTAAGCTTCAGCA 551
| ||| || | |||||||| | ||||||||||||| ||||| | | || ||||||||
Sbjct 669 ATTTGGAGAGG-AATCAACTCT-CTGGTCCGATCCCTGAGATCACGCTTCCTCTTCAGCA 726
Query 552 GTTTAATGTCTCGTCGAATCAGTTAAACGGGTCGATTCCG-GATCCGTTGTCGGGTATG- 609
|| ||||| || || ||||||||||||||||| |||||| | || ||||||| | ||
Sbjct 727 ATTCAATGTTTCTTCTAATCAGTTAAACGGGTCTATTCCGAGTTC-GTTGTCGTCT-TGG 784
Query 610 CC-CAAAACCGCTTTTTTAGGGAATT-TGCTATGTGGGAAGCCGTTAGA 656
|| | || | |||||| ||| || | || ||||||||||| |||||
Sbjct 785 CCTCGAA-CTGCTTTTGAAGGTAACACT-CTCTGTGGGAAGCCTTTAGA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5