BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356210
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like... 329 3e-89
AT1G66620.1 | Symbols: | Protein with RING/U-box and TRAF-like... 104 2e-21
> AT5G37890.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:15090286-15091894 REVERSE LENGTH=1159
Length=1159
Score = 329 bits (178), Expect = 3e-89
Identities = 577/760 (76%), Gaps = 65/760 (9%)
Strand=Plus/Plus
Query 466 AAGACACGCTCGGGGATGCTGCTTGG-TTTGGATG-TTCTGGACTGTCCTATTTGCTTTG 523
|||| ||||||| ||||| ||| | |||| | |||| || ||||| ||||||| |
Sbjct 181 AAGAAACGCTCGACAATGCT-AATGGATCTGGA-GATTCTCGATTGTCCCATTTGCTACG 238
Query 524 AGGCATTGACTATTCCTATCTTTCAGTGTGACAATGGACATATAGCTTGTTCTTCTTGCT 583
| || || || ||||| ||||| |||||||| ||||||||| | ||||||||||||||||
Sbjct 239 AAGCTTTCACAATTCCCATCTTCCAGTGTGATAATGGACATTTGGCTTGTTCTTCTTGCT 298
Query 584 GTCACAAACTGAGTAATAAGTGCCCTACATGTGCTTCTCCTGTTGGCCACAATCGCTGCA 643
||| |||||| | ||| || |||||| | ||| |||| ||||||||||||||||||||||
Sbjct 299 GTCCCAAACTAAATAACAAATGCCCTGCGTGTACTTCGCCTGTTGGCCACAATCGCTGCA 358
Query 644 GAGCAATGGAGAGTGTGCTCGAATC-AGTCTTTG-TCCCATG-CCGAAACGCCAAGTTTG 700
|||||||||||||||| || ||||| | |||| | |||| || ||||| ||||||||| |
Sbjct 359 GAGCAATGGAGAGTGTTCTTGAATCGA-TCTT-GATCCCGTGTCCGAA-CGCCAAGTTAG 415
Query 701 GATGCACCAAA-AATGTGTCTTATGGGAAAGTA-TCAACTCATGAAAAAGAATGCACT-T 757
| |||| ||| ||||| ||||||||||||| | | |||||||||||| ||||||| | |
Sbjct 416 GTTGCAA-AAAGAATGTATCTTATGGGAAAG-AGTTAACTCATGAAAAGGAATGCA-TGT 472
Query 758 TCTCTCAATGCTCCTGCCCTGCATTGGACTGCAATTACACCGGATCATACAATGA-CATC 816
||||||| ||| |||||||||||||||| ||||||||||| | |||||||| || | |
Sbjct 473 TCTCTCATTGCGCCTGCCCTGCATTGGATTGCAATTACACTAGCTCATACAAGGATC-TG 531
Query 817 TACAGTCACTTT-GTTGATAACC-ATC-GTAAC-AAATCCACATCTATATCCTTTG-TCT 871
|||| ||||| | || || ||| || | || ||| ||| || || || | || | |
Sbjct 532 TACACTCACTATCGT--ATTACCCATATGGAAATAAA-CCAGAT-TA-ATACGTTCATTT 586
Query 872 GCGGTGGTTCTGTTGA-TGTTCAGATGAACAT-ATCTACCGGTAATATTCTAGTACTTCA 929
| | ||| || | ||| | ||||||||| | | | | | |||| | || |
Sbjct 587 GTGACA-TTCCCTTAAGTGTCCGGATGAACATCAGCAAAAAG-A-TATTG-ATTAGAAC- 641
Query 930 GGAAT-CTAAGAAGGGA-CTATT-GTTTGC-GCTGCAGTGTTTCTACA-AGCCGCT-TGG 983
|||| || || | | | ||| |||||| | ||||||||||| | ||||| | |||
Sbjct 642 GGAACACTT-GACGA-ATC-ATTTGTTTGCAG-TGCAGTGTTTC-AGGGAGCCG-TATGG 695
Query 984 TTTGTATGTGACTGTTAGATGCATTGCACCATCTACTCCTGAACTAGGGAAG--CTTGCA 1041
| ||||||| ||||| || |||||||| |||||| |||| ||| || | || || ||
Sbjct 696 TGTGTATGTAACTGTAAGCTGCATTGCGCCATCTTCTCCAGAATTAAGTCAGTACT--CA 753
Query 1042 TATTG-TCTCTACT-ACTCTATGGATGGACAAACTCTTACATAC-AAGTCACCAGAAGTG 1098
||| | ||||| || || || | |||||||| ||| | | ||| || |||||||| |||
Sbjct 754 TAT-GCTCTCT-CTTACACTGTCGATGGACACACTGTGATTTACCAA-TCACCAGAGGTG 810
Query 1099 AAGAAGGTTCTTGAAGT-GAGCTCTGAAACCCCTCAAGACAATTTCATGTTTG-TCCCTC 1156
|||| ||||||| |||| ||| | | ||||||| ||||| ||||||||||| | | || |
Sbjct 811 AAGAGGGTTCTT-AAGTTGAGTTTTCAAACCCCGCAAGAGAATTTCATGTT-GATTCC-C 867
Query 1157 A-CTCTTTGTTACGTGGTGAATTTCT-GGAGATGAAGATT 1194
| | ||| || |||||||| | | | ||| |||| ||||
Sbjct 868 AACAGTTTATTGCGTGGTGA-TGTGTTGGAAATGAGGATT 906
> AT1G66620.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr1:24852806-24854153 REVERSE LENGTH=1051
Length=1051
Score = 104 bits (56), Expect = 2e-21
Identities = 155/201 (77%), Gaps = 14/201 (7%)
Strand=Plus/Plus
Query 537 TCCTATCTTTCAGTGTGACAATGGACATATAGCTTGTTCTTCTTGCTGTCAC-AAACTGA 595
||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 268 TCCTATCTTCCAGTGTGACAATGGACATATAGCTTGTTCTTCTTGTTGT-ACTAAACTGA 326
Query 596 GTAATAAGTGCCCTACATGTGCTTCT-CCTG-TTGGCCACAATCGCTGC-AG-AGCAATG 651
| || || |||||| | || |||| | || | |||| || ||| | | || | ||||
Sbjct 327 GGAACAAATGCCCTTCTTGCGCTT-TGCC-GATTGGTAACTTTCGAT-CTAGGAT-AATG 382
Query 652 GAGAGTGT-GCTCGAATCAGTCTTTGTCCCATGCCGAAACGCCAAGTTTGGATGCACCAA 710
||||| || | | ||| ||||| | ||| |||||| ||| | || ||| ||||| |
Sbjct 383 GAGAGAGTTGTT-GAAGCAGTCATGGTCACATGCCCAAATGTGAAACATGGTTGCACTGA 441
Query 711 AAATGTGT-CTTATGGGAAAG 730
|| || | ||||||||||||
Sbjct 442 GAA-GTTTTCTTATGGGAAAG 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5