BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356214
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38120.1 | Symbols: | ARM repeat superfamily protein | chr4... 929 0.0
> AT4G38120.1 | Symbols: | ARM repeat superfamily protein | chr4:17888519-17896107
REVERSE LENGTH=3694
Length=3694
Score = 929 bits (503), Expect = 0.0
Identities = 692/778 (89%), Gaps = 33/778 (4%)
Strand=Plus/Plus
Query 2 TGGaaaa-aaaGCTGCCTGAACAGAATAGCTTATGGGATTCCATGGCTCTTGCCTTTGAA 60
||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 622 TGGAAAAGAAA-CTGCCTCAACAGAATCGCTTATGGGATTCCATGGCTCTTGCCTTTGAC 680
Query 61 ATGTTTGGTAGAGCATTTTCTGTGTCTGAGTCTTTGTTTCCTACTGACGTCTGCCAATGC 120
||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 681 ATGTTTGGTAGAGCATTTTCTCTATCTGAGTCTTTGTTTCCTACTGACGTCTCCCAATGC 740
Query 121 ACGCTAGAGGTTCTAAGGAAAGTAATGGATGTCTTAGCATCCAAGGGCCTGCTTGTCGAA 180
||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||
Sbjct 741 ACGCTAGAGGTTCTAAGGAAAGTAATGGACGTATTAGCATCTAAGGGCCAGCTTGTCGAA 800
Query 181 GACCGATTTATGTGGAGATTTTATTCATGCCTTCTAGGCTGTGCGCACGAGGTCCTTACA 240
|||||||| |||||||| || | ||||||| | || | || | || | | ||||
Sbjct 801 GACCGATTCATGTGGAG---GTA-T-ATGCCTT-T-GGTTTTGTG---GA-G-AC-TACA 847
Query 241 A-ATA-T-CAAATGTCCT-GTTTCTGATCACGTCTTAAGTT----TCATAGCGGCATTGA 292
| || | | | | || | |||| || | | ||| ||| || ||||| ||||||
Sbjct 848 ATTTACTCCTTTTTTTCTGGGTTCT-ATTA-GACTT--GTTGCCCTCTTAGCGTCATTGA 903
Query 293 GAATGTTTTTCTGTTTTGGACTTACTGGCCCACCCCAGTTCTCTCATTCTGATGTTGTTC 352
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 904 GAATGTTTTTCTGTTTTGGACTTACTGGCCCACCTCAGTTATCAGTTTCTGATGTTGTTC 963
Query 353 ACAAAGATAAGCAATTAAATGTCATGCTTTC-CACATTGATTTCTGGAGTAAGTAAGAAC 411
|||| |||||||| || ||||||| |||||| | |||||||||||||||||||||||||
Sbjct 964 ACAACGATAAGCATTTGAATGTCAAGCTTTCTC-CATTGATTTCTGGAGTAAGTAAGAAT 1022
Query 412 GCCAAGAATAATCCTTATAGGCCACCCCACTTGCGCAAGAGGGATGTTTTGAACACTAAG 471
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1023 GCCAAGAATACTCCTTATAGGCCACCCCACTTGCGCAAGAGGGATGATTTGAACACTAGG 1082
Query 472 CAGCCAGTGTCTTGTGA-CTGGCGGCGCCTGTCTGCTCATGATTCTGGTAGTTGTGATGT 530
||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1083 CAGCCAGTGTCTT-CAAGCTGGCGGCGCCTATCTGCTCATGATTCTGGTAGTTCTGATGT 1141
Query 531 TATATCATCAGATTCTGATTTTAGTGACAGTGATGGTTCCGTACGGGATTCTTATTGTGC 590
||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| |||
Sbjct 1142 TATATCATCAGATTCCGATTTTAGTGACAGTGACGGCTCCGTACCGGATTCTTATTTTGC 1201
Query 591 CCAAAGCTCGAAGGTTAGAATAGCTGCCATTGTTTGCATACAGGATCTTTGCCAGGCTGA 650
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1202 CCAAAGCTCCAAGGTTAGAATAGCTGCAATTGTTTGCATACAGGATCTTTGCCAGGCTGA 1261
Query 651 TTCAAAGTCATTTACCACTCAGTGGATGGA-TCTCTTTCCAACCAGTGATGTACTCAAGC 709
||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||
Sbjct 1262 TTCAAAGTCATTTACCACTCAGTGGGT-GACTCTCTTTCCAACAAGTGATGTACTCAAGC 1320
Query 710 CAAGGAAGTTTGAAGCTACTCTAATGACCTGCTTGCTTTTTGATCCTCATTTGAAGGT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CAAGGAAGTTTGAAGCTACTCTAATGACCTGCTTGCTTTTTGATCCTCATTTGAAGGT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5