BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356279
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47140.1 | Symbols: GATA27 | GATA transcription factor 27 | ... 2213 0.0
> AT5G47140.1 | Symbols: GATA27 | GATA transcription factor 27
| chr5:19144635-19147489 FORWARD LENGTH=2072
Length=2072
Score = 2213 bits (1198), Expect = 0.0
Identities = 1360/1435 (95%), Gaps = 23/1435 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGCGAAAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 474 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGAGAAAC 533
Query 61 GGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGA 593
Query 121 TCATTAGTAAACTACACACCTCTTCATGCGCGTGCTGAAGGTGATGAGATTGAGATTGAG 180
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 594 TCATTAGTAAACTACACACCTCTTCATGCTCGTGCTGAAGGTGATGAGACTGAGATTGAG 653
Query 181 GATCATAGAGCTCAAA-GAGTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAA 239
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATCATAGAACTCAAACG-GTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAA 712
Query 240 GAGGAAACCATATCAAGAAAATTTTACAGTTAAAAGAGCTAACTTGGAATTCCATGCCGG 299
||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||
Sbjct 713 GAGGAAACCATATCAAGAAAACTTCACAGTGAAAAGAGCTAACTTGGAATTCCATACCGG 772
Query 300 TTTCAAGAGGAAGGTTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGT 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTTCAAGAGGAAGGCTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGT 832
Query 360 ATCAAACTCCGAGAGCTGTGCACAATCTAATGCATGGGACGCGACTTTTCCTTGTAAGAG 419
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 833 ATCAAACTCCGAGAGCTGTGCACAATCTAATGCGTGGGACTCGACTTTTCCTTGTAAGAG 892
Query 420 GAGGACATGTGTGGGCCGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCT 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAGGACATGTGTGGGACGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCT 952
Query 480 CTATACTATTCTACAAGAACAACAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTT 539
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 953 TTATACTATTCTACAAGAACAGCAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTT 1012
Query 540 GCTTTTTGAGAGTGAAACACCAATGTTGTTAGGACATGGGAGTGTTCTTATGAGAGATCC 599
||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1013 GCTTTTTGAGAATGAAACACCAATGCTGTTAGGACATGGTAGTGTTCTTATGAGAGATCC 1072
Query 600 TCACCCGGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAA 659
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TCACTCAGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAA 1132
Query 660 GTCCTCATCAGTTCATTCTGTGAAATTTGGTGGAAAGGCAATAAAGCAGGAGCAACTGAA 719
||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||
Sbjct 1133 GTCTTCATCAGTTCATTCTGTTAAATTTGGTGGAAAAGCAATGAAGCAGGAGCAAGTGAA 1192
Query 720 GAGGAGCAAATCTCAAGTCTTAGGACGACATAGTTCACTACTCTGTAGCATAGATTTGAA 779
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1193 GAGGAGCAAATCTCAAGTCTTAGGAAGACATAGTTCACTACTCTGTAGCATAGATTTGAA 1252
Query 780 GGACGTTTTCAACTTTGATGAGTTCATAGAAAAATTCACAGAGGAAGAACAGGAAAAACT 839
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1253 GGATGTTTTCAACTTTGATGAGTTCATAGAAAATTTCACAGAGGAAGAACAGCAAAAACT 1312
Query 840 GATGAAACTAGTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTT 899
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GATGAAATTACTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTT 1372
Query 900 TGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGT 1432
Query 960 TTTTGAGACAACTTCGTCTTATTCCTCTGCATCAAAACTTGAAGACATTAAGACACTTGC 1019
||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 1433 TTTTGAGACAAATTCGTCTTAT------GCA--AAA-CTTGAAGACATTAAGACACTTGC 1483
Query 1020 AAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAACTATTACATGCTCAA 1079
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1484 AAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAGCTATTACATGCTCAA 1543
Query 1080 GGAACAGaaaaaaaGGACTGAAGACTCTGTTACTACAGCATCAACGGTCTCAAACCTGAG 1139
| | ||| | | | | |||||||| |||||||||| |||||| |||||||| | ||||
Sbjct 1544 G-A---GAAGAGA-G-ATTGAAGACTGTGTTACTACAACATCAAGGGTCTCAAGCTTGAG 1597
Query 1140 TCCATCAAAGAATAATAGTCTTGTAACTATTGAAAGACCTTGTGAAAGCTTAAACCAAAA 1199
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1598 TCCATCGAATAATAATAGTCTTGTAACCATTGAAAGACCTTGTGAAAGCTTAAACCAAAA 1657
Query 1200 CTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCCAAAGAAGTGATGAAGATTAGATCAAA 1259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1658 CTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCGAAAGAAGTGATGAAGATTAGATCAAA 1717
Query 1260 GCACATCGAAACCAAAGAGATTTTAGAGAACAGTGTCTCTTCCTTTAAACCTATGAGCTG 1319
||||| |||| | || |||| |||||| ||||| ||||||||||||||| |||||||
Sbjct 1718 GCACACCGAAG--A--GA-ATTT-AGAGAATAGTGTATCTTCCTTTAAACCTGTGAGCTG 1771
Query 1320 TGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCT 1831
Query 1380 TGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTTCACATGATATGA 1434
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1832 TGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTAAACATGATATGA 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5