BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg356279 Length=1434 Score E Sequences producing significant alignments: (Bits) Value AT5G47140.1 | Symbols: GATA27 | GATA transcription factor 27 | ... 2213 0.0 > AT5G47140.1 | Symbols: GATA27 | GATA transcription factor 27 | chr5:19144635-19147489 FORWARD LENGTH=2072 Length=2072 Score = 2213 bits (1198), Expect = 0.0 Identities = 1360/1435 (95%), Gaps = 23/1435 (2%) Strand=Plus/Plus Query 1 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGCGAAAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 474 ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGAGAAAC 533 Query 61 GGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 GGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGA 593 Query 121 TCATTAGTAAACTACACACCTCTTCATGCGCGTGCTGAAGGTGATGAGATTGAGATTGAG 180 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 594 TCATTAGTAAACTACACACCTCTTCATGCTCGTGCTGAAGGTGATGAGACTGAGATTGAG 653 Query 181 GATCATAGAGCTCAAA-GAGTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAA 239 ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GATCATAGAACTCAAACG-GTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAA 712 Query 240 GAGGAAACCATATCAAGAAAATTTTACAGTTAAAAGAGCTAACTTGGAATTCCATGCCGG 299 ||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||| Sbjct 713 GAGGAAACCATATCAAGAAAACTTCACAGTGAAAAGAGCTAACTTGGAATTCCATACCGG 772 Query 300 TTTCAAGAGGAAGGTTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGT 359 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 TTTCAAGAGGAAGGCTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGT 832 Query 360 ATCAAACTCCGAGAGCTGTGCACAATCTAATGCATGGGACGCGACTTTTCCTTGTAAGAG 419 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 833 ATCAAACTCCGAGAGCTGTGCACAATCTAATGCGTGGGACTCGACTTTTCCTTGTAAGAG 892 Query 420 GAGGACATGTGTGGGCCGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCT 479 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 AAGGACATGTGTGGGACGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCT 952 Query 480 CTATACTATTCTACAAGAACAACAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTT 539 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 953 TTATACTATTCTACAAGAACAGCAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTT 1012 Query 540 GCTTTTTGAGAGTGAAACACCAATGTTGTTAGGACATGGGAGTGTTCTTATGAGAGATCC 599 ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1013 GCTTTTTGAGAATGAAACACCAATGCTGTTAGGACATGGTAGTGTTCTTATGAGAGATCC 1072 Query 600 TCACCCGGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAA 659 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 TCACTCAGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAA 1132 Query 660 GTCCTCATCAGTTCATTCTGTGAAATTTGGTGGAAAGGCAATAAAGCAGGAGCAACTGAA 719 ||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||| Sbjct 1133 GTCTTCATCAGTTCATTCTGTTAAATTTGGTGGAAAAGCAATGAAGCAGGAGCAAGTGAA 1192 Query 720 GAGGAGCAAATCTCAAGTCTTAGGACGACATAGTTCACTACTCTGTAGCATAGATTTGAA 779 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1193 GAGGAGCAAATCTCAAGTCTTAGGAAGACATAGTTCACTACTCTGTAGCATAGATTTGAA 1252 Query 780 GGACGTTTTCAACTTTGATGAGTTCATAGAAAAATTCACAGAGGAAGAACAGGAAAAACT 839 ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1253 GGATGTTTTCAACTTTGATGAGTTCATAGAAAATTTCACAGAGGAAGAACAGCAAAAACT 1312 Query 840 GATGAAACTAGTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTT 899 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1313 GATGAAATTACTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTT 1372 Query 900 TGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGT 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1373 TGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGT 1432 Query 960 TTTTGAGACAACTTCGTCTTATTCCTCTGCATCAAAACTTGAAGACATTAAGACACTTGC 1019 ||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 1433 TTTTGAGACAAATTCGTCTTAT------GCA--AAA-CTTGAAGACATTAAGACACTTGC 1483 Query 1020 AAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAACTATTACATGCTCAA 1079 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1484 AAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAGCTATTACATGCTCAA 1543 Query 1080 GGAACAGaaaaaaaGGACTGAAGACTCTGTTACTACAGCATCAACGGTCTCAAACCTGAG 1139 | | ||| | | | | |||||||| |||||||||| |||||| |||||||| | |||| Sbjct 1544 G-A---GAAGAGA-G-ATTGAAGACTGTGTTACTACAACATCAAGGGTCTCAAGCTTGAG 1597 Query 1140 TCCATCAAAGAATAATAGTCTTGTAACTATTGAAAGACCTTGTGAAAGCTTAAACCAAAA 1199 |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1598 TCCATCGAATAATAATAGTCTTGTAACCATTGAAAGACCTTGTGAAAGCTTAAACCAAAA 1657 Query 1200 CTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCCAAAGAAGTGATGAAGATTAGATCAAA 1259 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1658 CTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCGAAAGAAGTGATGAAGATTAGATCAAA 1717 Query 1260 GCACATCGAAACCAAAGAGATTTTAGAGAACAGTGTCTCTTCCTTTAAACCTATGAGCTG 1319 ||||| |||| | || |||| |||||| ||||| ||||||||||||||| ||||||| Sbjct 1718 GCACACCGAAG--A--GA-ATTT-AGAGAATAGTGTATCTTCCTTTAAACCTGTGAGCTG 1771 Query 1320 TGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCT 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1772 TGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCT 1831 Query 1380 TGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTTCACATGATATGA 1434 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1832 TGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTAAACATGATATGA 1886 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70682367360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5