BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356289
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47790.1 | Symbols: | SMAD/FHA domain-containing protein |... 1474 0.0
AT5G47090.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 261 1e-68
> AT5G47790.1 | Symbols: | SMAD/FHA domain-containing protein
| chr5:19351292-19353444 FORWARD LENGTH=2079
Length=2079
Score = 1474 bits (798), Expect = 0.0
Identities = 1011/1108 (91%), Gaps = 38/1108 (3%)
Strand=Plus/Plus
Query 11 GAAGATCTGGGCTCGACAGGTTTAAGAAGTCCGAAACCTCGGAACCATTCTCTGTATCAG 70
|||||||||| || |||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 112 GAAGATCTGGTCTTGACAGGTTTAAGAAGTCCCAAACTTCGGAACCCTTCTCTGTATCAG 171
Query 71 CAAATCCTCCTCCGGTGGTGGTACAACATTC-GTCT---GCGGCATTATCGGGG---AAA 123
||||||||||||||||||| |||||| || |||| | |||||| |||||| |||
Sbjct 172 CAAATCCTCCTCCGGTGGTACAACAACA-TCTGTCTCCGGAGGCATTGTCGGGGCAAAAA 230
Query 124 ACTCAGATTGGAGCTGGTCAATCAAACTGGCATCCACCTGATTGGGCGATTGAGCCTCGT 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 231 ACTCAGATTGGAGCTGGTCAATCAAACTGGCATCCCCCTGATTGGGCGATTGAGCCTCGT 290
Query 184 GCCGGTGTCTACTCTCTGGAGGTTGTGAAAGACGGCCAGATCCTTGATCGGATTCATCTA 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCCGGTGTCTACTCTCTGGAAGTTGTGAAAGACGGCCAGATCCTTGATCGGATTCATCTA 350
Query 244 GATAGACGGAGTCATATCTTCGGGAGACAACATCAGACTTGTGATTATGTGCTTGATCAT 303
|||||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 351 GATAGACGAAGGCATATCTTCGGGAGACAACATCAGACTTGTGATTTTGTCCTTGATCAT 410
Query 304 CAGTCTGTTTCACGCCAACATGCCGCCGTTGTTCCTCACAAGAATGGTAGTATCTTTGTG 363
||||||||||| ||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct 411 CAGTCTGTTTCCCGCCAGCATGCCGCAGTTGTTCCTCACAAGAATGGCAGCATCTTTGTG 470
Query 364 ATTGACTTGGGATCAGCTCATGGTACCTTTGTTGCTAATGAGAGATTGACTAAAGATACT 423
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 471 ATTGACTTGGGATCAGCTCATGGTACGTTTGTTGCAAATGAGAGGTTGACTAAAGATACT 530
Query 424 CCTGTAGAGCTTGAAGTAGGCCAATCCTTACGATTTGCTGCCTCTACAAGAATCTACCTT 483
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 531 CCTGTAGAGCTTGAAGTGGGTCAATCCTTACGATTTGCTGCCTCCACAAGAATCTACCTT 590
Query 484 TTGAGGAAGAACAGTGAGGCTCTCTTTTCTCG-----C-CCT----C--AGATTAAGCTT 531
|||| |||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 591 CTGAGAAAGAACAGTGAGGCTCTCTTTTCTCGCCCTCCACCTCCAGCTGAGATTAAGCTT 650
Query 532 CCCCCACCTCCTGATGCTTCTGATGAGGAAGCTCTTGTTGCATACAATACTTTGCTGAAT 591
|| |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 651 CCTCCACCTCCTGATGCTTCTGATGAGGAAGCTGTTGTTGCTTACAATACCTTGCTGAAT 710
Query 592 CGATATGGTTTAAGCGATGGAGAATCGGGTTCTGTGTTAGGTAAAAGGAAGGAGAAGACC 651
||||||||||||||| |||||||||| ||| | ||||||| |||||||| |||||||||
Sbjct 711 CGATATGGTTTAAGCAATGGAGAATCTGGTGGTATGTTAGGGAAAAGGAAAGAGAAGACC 770
Query 652 GGATCAGAAGCCGGAGTGGCTAAGAGGATGAAGAATGTGAGAGTGAGCTTCAGGGATCAA 711
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 771 GGATCAGAAGCGGGAGTGGCTAAGAGGATGAAGAAAGTGAGAGTGAGCTTCAGGGATCAA 830
Query 712 CTTGGAGGAGAGCTGGCTGAGATTGTTGGCATGTCAGATGGAGCAGACGTGGAAACAGAG 771
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 831 CTAGGAGGAGAGCTGGCTGAGATTGTTGGCATGTCTGATGGAGCAGACGTGGAAACAGAG 890
Query 772 CCTGGTCCTATAAATGTCAAAGAAGGAAGCCTCGTTGGGAAATATGAATCACTGGTGCAA 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 891 CCTGGTCCTATAAATGTCAAAGAAGGAAGCCTCGTTGGGAAATATGAATCACTGGTGCGA 950
Query 832 GTGACACTCATACCCAAAGGCAAAGTGAAGGAAGAGAAAGCCTTTACAGGA--ACCA-GA 888
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 951 GTGACACTCATACCCAAAGGCAAAGTGAAGGAAGAGAAAGCCTTTACAGGAGGAACAAGA 1010
Query 889 GGTG-TG-A-CGGATCGACTCCAGGAAGCCATGAATATGTTAAAAGGGGGTCCAAAAAGA 945
|| | || | | ||||||||||||||||| ||||||||||| ||| |||||||||||| |
Sbjct 1011 GGAGGTGTAACAGATCGACTCCAGGAAGCTATGAATATGTTGAAACGGGGTCCAAAAACA 1070
Query 946 GGGATTTATGATGATCTTTACGGTGGTGACTCACTTGCCAAGGCCGTTGGTACGTCATGG 1005
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1071 GGGATTTACGATGACCTTTACGGTGGTGACTCACTTGCCAAGGCTGTTGGTACGTCATGG 1130
Query 1006 GCTTCTGTGAGTGAACCAGCATCTAAAGTTAAAGAAGAAACTGAATGCAGAGGGGTTGGT 1065
|||||||||||| |||||||| || | ||| ||| || || |||||||||||
Sbjct 1131 GCTTCTGTGAGTCAACCAGCAGCT---G--AAACT-GAA--TG--TG--GAGGGGTTGGT 1178
Query 1066 GAAGAAGATGATAACGACGATCTGTTTG 1093
||||||||||||||||||||||||||||
Sbjct 1179 GAAGAAGATGATAACGACGATCTGTTTG 1206
> AT5G47090.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613);
Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:19127259-19128769 FORWARD
LENGTH=1224
Length=1224
Score = 261 bits (141), Expect = 1e-68
Identities = 195/219 (89%), Gaps = 12/219 (5%)
Strand=Plus/Plus
Query 1221 AGAACAGAACA-ACAAGGC-A-AACAGTCATACCGCCAGAGGAGATGCAAGATATGATGG 1277
||||||||| | | ||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 735 AGAACAGAA-AGAGAAGGCAACAACAGTCTTACCGCCAGAGGAGATGCAAGATATGATGG 793
Query 1278 ATCAGTTCACAACTTCACATCAATCATGCAACAAAAGTTCTTATTGGGAGAAGATCATCA 1337
||||| ||||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct 794 ATCAG--------TTCACATCAATCATGGAACAGAAGTTCTTATCGGGAGAAGATCATCA 845
Query 1338 ACATTTGGATTACACAGAGTTAAACAATGACGAGACTCTTGATGATCATTGGCTTCGAGA 1397
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct 846 ACATTTGGATTACGCAAAGATAGACAATGACGAGACTCTTGATGATCATTGGCTTCGAGA 905
Query 1398 GATTGGCCTTGACGCTGAAGAAAAGTACTTTGGTGAAGA 1436
|||||||| |||||||||||| |||||||||| ||||||
Sbjct 906 GATTGGCCGTGACGCTGAAGATAAGTACTTTGATGAAGA 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5