BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356317
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46810.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1454 0.0
AT5G46820.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1362 0.0
> AT5G46810.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:18991164-18993376 FORWARD LENGTH=1127
Length=1127
Score = 1454 bits (787), Expect = 0.0
Identities = 973/1062 (92%), Gaps = 15/1062 (1%)
Strand=Plus/Plus
Query 88 AAGCCTCAAGAACCCGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACTACAC 147
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 10 AAGCCTCAAGAACCTGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACAACAC 69
Query 148 CCTCAACTCAAAAATCATCAAATCCAAATGAGACCGAGCGACGAATTCTTAGCCATGCTA 207
||| ||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||||
Sbjct 70 CCTAAACTCCAAAATCACCGAATCCAAATGAGACCGAGCGATGAAGCCTTAGCCATGCTC 129
Query 208 TCAGGAGATACATCAGCAGAAAACTTATCAGACGATGAAATGGTTGCTGAGTTTGATATA 267
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 130 TCAGGAGATACATCATCAGAAAACTTATCAAACGATGAAATGGTTGCTGAGTTTGATATA 189
Query 268 CCAGAAGAAGGATGTCCACAAGGACAAGTACCAATCCATAAACCAAGAAATC-T--CAAC 324
||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 190 CCAGAAGAAGGATGTCCTCAAGGACAAGTACCAATCCATAAACCAAGAAATAATTTCAAC 249
Query 325 CACACCGAGAAACCTTTTCAGCCTATTAATGGATATGGAACTGTTGGTCAACATGCTGCG 384
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 250 CACACCGAGAAACATTTTCAGCCTATTAATGGATTTGGAACTGTTGGTCAACATGCTGCG 309
Query 385 ATAATGAAGAAAATCGATGCTATCCCGTGGCGTGGAGCATCAGCATGGATTAGTATTTAC 444
||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 310 GTAATGAAGAAAATCGATGCCACCCCGTGGCGTGGAGCATCAGCATGGATAAGTATTTAC 369
Query 445 CAACCTAAATTGAGAAATAAAGAGCAATTCAGCATGGCTTTGATTTGGCTCAATACTGAG 504
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 CAACCTAAATTGACAAATAAAGAGCAATTCAGCATGGCTTTCATTTGGCTCAATACTGAG 429
Query 505 AATCAAGGCGAACGCACCAGTGCTCAGTTTGGTTGGGCTGTGATTCCTGCATTATATGGC 564
|| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 430 TATGAAGGCGAACGCACCAGTGCCCACTTTGGTTGGGCTGTGATTCCTGCACTATATGGC 489
Query 565 GATTA-CCGTACAAGACTTACTGCATATTGGAGTCCGGATAAACTCGAAAACGGATGTTA 623
||| | ||||||| ||||||||||||| ||||||| |||| | |||||| |||||||||
Sbjct 490 GAT-AGCCGTACACGACTTACTGCATACTGGAGTCAAGATACATTCGAAAGCGGATGTTA 548
Query 624 CAATACGAAATGTAAGGGTTTCGTTCAAATTGACCGGAGAATCTTTCTTGGTGCCGGTTT 683
||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 549 CAATATAAAATGTAAGGGTTTCGTTCAAATTGATAGGAGACTCTTTCTTGGAGCCGGTTT 608
Query 684 TTCGAAAACCTCTGTGGTGGGAGGCACACAATTT-AAAGCTTTCTTTT-CAATCAATCAG 741
| |||| |||||||||||||||||| || ||||| |||||||| |||| |||||||||||
Sbjct 609 TGCGAACACCTCTGTGGTGGGAGGC-CAAAATTTTAAAGCTTT-TTTTGCAATCAATCAG 666
Query 742 GATCCAAAAACAAAGAATTTGCTGCTGACAGTCGGGAAGATTTACATAGGGTATTGGCCA 801
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 667 GATCCAAAAACAAACAATTTGCTGCTGACAGTGGGGAAGATTTACTTAGGGTATTGGCCA 726
Query 802 GAGGAACTTCTACCTTATTTCTA-T-AATGGAGCGGAGGCAGTTATATATGGTGGATTCA 859
|||||||||||||||| |||| | | || ||||||||| ||||||||||||||||||| |
Sbjct 727 GAGGAACTTCTACCTTTTTTC-ACTGAA-GGAGCGGAGTCAGTTATATATGGTGGATTGA 784
Query 860 CGAATGCTCCATCCGAAAACATTCAACTATTTGATATAGTTAGTCCACCGATGGGTAACG 919
||||||||||||| || |||||||| ||| |||||||||| ||||||||||||||||
Sbjct 785 CGAATGCTCCATCTGATGGCATTCAACCCTTTAATATAGTTAGCCCACCGATGGGTAACG 844
Query 920 GGAATAAACCGCTGGATGAGGAAGTGGATCTAAAACATACTTGTTATATGCACTCTCTTA 979
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 845 GGAACAAACCGCTGGATGAGGAAGTTGATCTAAAGCATACTTGTTATATGCACTCTCTTA 904
Query 980 AATATGTGACACCAGATTATAAGAGTGTCGATATTGATTCCGACAAGGTCACCGAAGTTG 1039
|||||||||||| |||||| |||||||||||| ||||| || |||||||| |||||||||
Sbjct 905 AATATGTGACACAAGATTACAAGAGTGTCGATGTTGATACCAACAAGGTCGCCGAAGTTG 964
Query 1040 CGGATGCAGGTAAATGTTACGACGTGATTTATTTTGATAAACTTGGGCAATATGGACAAG 1099
|||| ||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 965 CGGACGCAGGTATATGTTACGACGCGATTTATTTTGATAAACTTGGGGGGTATGGACAAA 1024
Query 1100 CGTTTACCTTCGGTGGACCAGGTGGTT-TCTGTGATGTGTGA 1140
|||||||||||||||||||||||||| | ||||||||||||
Sbjct 1025 CGTTTACCTTCGGTGGACCAGGTGGTCAT-TGTGATGTGTGA 1065
> AT5G46820.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:18993633-18996672 FORWARD LENGTH=1059
Length=1059
Score = 1362 bits (737), Expect = 0.0
Identities = 957/1058 (90%), Gaps = 35/1058 (3%)
Strand=Plus/Plus
Query 90 GCCTCAAGAACCCGAATACGAATGCGTTGATATCTACAAACAACCTTCGCTACTACACCC 149
|||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 30 GCCTCAAGAACCTGAGTACGAATGCGTTGATATCTACAAACAACCTTCGCTACAACACCC 89
Query 150 TCAACTCAAAAATCATCAAATCCAAATGAGACCGAGCGACGAA-TTCTTAGCCATGCTAT 208
| ||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 90 TAAACTCCAAAATCACCAAATCCAAATGAGACCGAGCGACGAAGTTC-TAGCCATGCTAT 148
Query 209 CAGGAGATACATCAGCAGAAAACTTATCAGACGATGAAATGGTTGCTGAGTTTGATATAC 268
|||||||||||| ||| | | | ||||||||||||||||||||||||||||||
Sbjct 149 CAGGAGATACAT---CAG----C--A--A-ACGATGAAATGGTTGCTGAGTTTGATATAC 196
Query 269 CAGAAGAAGGATGTCCACAAGGACAAGTACCAATCCATAAACCAAGAAATCTCAACCACA 328
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CAGAAGAAGGATGTCCTCAAGGACAAGTACCAATCCATAAACCAAGAAATCTCAACCACA 256
Query 329 CCGAGAAACCTTTTCAGCCTATTAATGGATATGGAACTGTTGGTCAACATGCTGCGATAA 388
|||||||||| ||| |||||||||||||||||||||||||||| | ||| | |||
Sbjct 257 CCGAGAAACC-TTTAAGCCTATTAATGGATATGGAACTGTTGG----C-TGC--AG-TAA 307
Query 389 TGAAGAAAATCGATGCTATCCCGTGGCGTGGAGCATCAGCATGGATTAGTATTTACCAAC 448
|||||||||||||||| | ||| |||||||||||||| |||||| |||||||||||||||
Sbjct 308 TGAAGAAAATCGATGCCACCCCATGGCGTGGAGCATCTGCATGGTTTAGTATTTACCAAC 367
Query 449 CTAAATTGAGAAATAAAGAGCAATTCAGCATG-GCTTTGATTTGGCTCAATACTGAGAAT 507
||||||||| ||||||||| ||||| |||||| | ||| || ||||||||||||||| ||
Sbjct 368 CTAAATTGACAAATAAAGACCAATTTAGCATGAG-TTTTATGTGGCTCAATACTGAGTAT 426
Query 508 CAA-GGCGAACGCACCAGTGCTCAGTTTGGTTGGGCTGTGATTCCTGCATTATATGGCGA 566
|| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 427 -AATGGCGAACGCACCAATGCCCAGTTTGGTTGGGCTGTGATTCCTGCATTATATGGCGA 485
Query 567 TTACCGTACAAGACTTACTGCATATTGGAGTCCGGATAAACTCGAAAACGGATGTTACAA 626
| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 486 TGACCGTACAAGACTTACGGCATACTGGAGTCCGGATAAAATCGAAAACGGATGTTACAA 545
Query 627 TACGA-AATGTAAGGGTTTCGTTCAAATTGACCGGAGAATCTTTCTTGGTGCCGGTTTTT 685
|| | ||||||| || |||||||||| ||||| ||| || ||||||| |||||||||
Sbjct 546 TA-TACAATGTAAAGGCTTCGTTCAAACTGACCATAGAGTCGCTCTTGGTACCGGTTTTT 604
Query 686 CGAAAACCTCTGTGGTGGGAGGC-ACACAATTTAAAGCTTTCTTTTCAATCAATCAGGAT 744
|||| |||||||||||||||||| || |||| ||||||||||||| |||||| |||||||
Sbjct 605 CGAACACCTCTGTGGTGGGAGGCAAC-CAATATAAAGCTTTCTTTGCAATCAGTCAGGAT 663
Query 745 CCAAAAACAAAGAATTTGCT-GCTGACAGTCGGGAAGATTTACATAGGGTATTGGCCAGA 803
|||||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||
Sbjct 664 CCAAAAACAAAGAATTTG-TGGCTGACAGTCCAGAAGATTAACATAGGGTATTGGCCAGA 722
Query 804 GGAACTTCTACCTTATTTCTATAATGGAGCGGAGGCAGTTATATATGGTGGATTCACGAA 863
|||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 723 GGAACTTCTACCTTTTTTCAATGATGGAGCGGAGTCAGTTATATATGGTGGATTCACGAA 782
Query 864 TGCTCCATCCGAAAACATTCAACTATTTGATATAGTTAGTCCACCGATGGGTAACGGGAA 923
||||||||| || ||||||||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct 783 TGCTCCATCTGATAACATTCAACTCTTTGAAATAGTTAGCCCACCTATGGGTAACGGGAA 842
Query 924 TAAACCGCTGGATGAGGAAGTGGATCTAAAACATACTTGTTATATGCACTCTCTTAAATA 983
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 843 CAAACCGCTGGATGAGGAAGTGGATCTAAAACATACTTGTTATATGCACTCTCTTAAGTA 902
Query 984 TGTGACACCAGATTATAAGAGTGTCGATATTGATTCCGACAAGGTCACCGAAGTTGCGGA 1043
||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 903 TGTGACACCAGATTACAAGAGTGTCGATGTTGATTCCAACAAGGTCGCCGAAGTTGCGGA 962
Query 1044 TGCAGGTAAATGTTACGACGTGATTTATTTTGATAAACTTGGGCAATATGGACAAGCGTT 1103
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 963 CGCAGGTATATGTTACGACGCGATTTATTTTGATAAACTTGGGCGGTATGGACAAACGTT 1022
Query 1104 TACCTTCGGTGGACCAGGTGGTT-TCTGTGATGTGTGA 1140
||||||||||||||||||||||| | |||||||| |||
Sbjct 1023 TACCTTCGGTGGACCAGGTGGTTAT-TGTGATGTTTGA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5