BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356357
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46430.1 | Symbols: | Ribosomal protein L32e | chr5:1883326... 689 0.0
AT4G18100.1 | Symbols: | Ribosomal protein L32e | chr4:1003548... 507 4e-143
> AT5G46430.1 | Symbols: | Ribosomal protein L32e | chr5:18833267-18834564
FORWARD LENGTH=602
Length=602
Score = 689 bits (373), Expect = 0.0
Identities = 391/400 (98%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTTCCGTTGCTTACGAAGAAGGTCGTGAAGAAGAGGTCTGCCAAATTCATCAGA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 46 ATGGCGGTTCCGTTGCTTACGAAGAAGGTGGTGAAGAAGAGGTCTGCCAAATTCATCAGA 105
Query 61 CCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGAC 165
Query 121 TCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATATTGGTTACGGATCT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 166 TCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATGTTGGTTACGGATCT 225
Query 181 GACAAGAAGACCCGCCACTACCTCCCCAATGGATTCAAGAAGTTCGTTGTTCACAACACC 240
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 226 GATAAGAAGACCCGCCACTACCTCCCAAATGGATTCAAGAAGTTCATTGTTCACAACACC 285
Query 241 TCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAAT 345
Query 301 GTCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACATTGTTGTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 346 ATCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACGTTGTTGTT 405
Query 361 TCGAACAAGCTTGCTAGGTTGCGTAGCCAGGAAGACGAGT 400
|| |||||||||| ||||||||||||||||||||||||||
Sbjct 406 TCCAACAAGCTTGGTAGGTTGCGTAGCCAGGAAGACGAGT 445
> AT4G18100.1 | Symbols: | Ribosomal protein L32e | chr4:10035485-10036541
REVERSE LENGTH=698
Length=698
Score = 507 bits (274), Expect = 4e-143
Identities = 358/400 (90%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTTCCGTTGCTTACGAAGAAGGTCGTGAAGAAGAGGTCTGCCAAATTCATCAGA 60
|||||||| || |||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 67 ATGGCGGTCCCATTGCTTACCAAGAAGGTTGTGAAGAAGAGGTCTGCTAAGTTCATCAGA 126
Query 61 CCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGAC 120
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 127 CCCCAGAGTGACCGTAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGAT 186
Query 121 TCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATATTGGTTACGGATCT 180
|| ||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||
Sbjct 187 TCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTACGGATCT 246
Query 181 GACAAGAAGACCCGCCACTACCTCCCCAATGGATTCAAGAAGTTCGTTGTTCACAACACC 240
||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 247 GACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCACAACACA 306
Query 241 TCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAAT 300
|||||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 307 AGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCTCACAAC 366
Query 301 GTCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACATTGTTGTT 360
||||| || |||||||||||||| || || ||||||||||||||||||||| ||||||||
Sbjct 367 GTCTCCACTAAGAAGAGAAAGGCAATTGTTGAGAGAGCTTCTCAGCTAGACGTTGTTGTT 426
Query 361 TCGAACAAGCTTGCTAGGTTGCGTAGCCAGGAAGACGAGT 400
| |||| |||||||||| | |||||||| ||||||||||
Sbjct 427 ACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5