BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356363
Length=3144
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46380.1 | Symbols: | Kinase-related protein of unknown fun... 414 2e-114
> AT5G46380.1 | Symbols: | Kinase-related protein of unknown function
(DUF1296) | chr5:18813088-18815974 REVERSE LENGTH=1824
Length=1824
Score = 414 bits (224), Expect = 2e-114
Identities = 441/540 (82%), Gaps = 38/540 (7%)
Strand=Plus/Plus
Query 2588 AGATGAATCAACAAGCCATGAA-CA--ACCATTACTCTCAGCCTATTATGGTTCCTTCAG 2644
||||||||| |||||||||||| || ||| |||| ||||||||| || ||||||||||
Sbjct 1283 AGATGAATCGACAAGCCATGAACCACCACCTTTACCCTCAGCCTA--AT-GTTCCTTCAG 1339
Query 2645 GGAATAATGGTAATATGATGAACTATCCGTACTCTCAGACAACACAGAATG---GCACCT 2701
| || |||||||||||||||||||||| ||||||| | |||||||||||| ||||
Sbjct 1340 AGCATTATGGTAATATGATGAACTATCCTTACTCTCTGCCAACACAGAATGATAATACCT 1399
Query 2702 ACAACATGTCACCGTCAGCATCTCACCAACATGGTGGTCGTAACAACAGCA-G-TTACCA 2759
|| ||||| || | ||||||| ||| ||||||||||||| ||||||| | | | |||||
Sbjct 1400 ACGACATGCCAGCATCAGCATTTCAGCAACATGGTGGTCTTAACAAC-G-ACGCCTACCA 1457
Query 2760 TCTTAGAT-CTTTAACTGCACCGCTTCC-TCACTACAGAAACAGTGT-TCTTTCTCCATC 2816
|||| | | ||||| |||||||||||| | | ||||| ||||| | || | |||| |
Sbjct 1458 TCTTCG-TCCTTTAGTTGCACCGCTTCCTTTGC-ACAGAGACAGT-TATCCATGTCCACC 1514
Query 2817 TGCTGTTC-CTTTTGTTCCTTCCACTCACAGTTCCGCTTACGGTTCCACTAA---T--GG 2870
|| || || || ||||| ||||| ||||| |||||||||||| |||| | ||
Sbjct 1515 AACT-CTCGCTGCTGGTCCTTACACTCGTAGTTCTGCTTACGGTTCCGCTAATGGTCCGG 1573
Query 2871 -TT-CGA--CT-C--ATGGTTTTGGCATGTTGAGTG---ATAACGCTCCAAACTTGAGGT 2920
|| ||| || | | |||| ||||||||| |||| ||||| || | ||||||||||
Sbjct 1574 CTTACGATTCTGCTTACGGTTGTGGCATGTTAAGTGATCATAACACTGCGAACTTGAGGT 1633
Query 2921 TTGA-GTATGAAGATGACTTCCACTCACAGTTTAGCAATCACTTGGCAACACTTCAGCAT 2979
|||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 1634 TTGACG-ATGAAGATGACTTCCACACACGGTTTAGCAATCACTTGGCATCACTTCAGCAT 1692
Query 2980 CAGAATGGGACCCCTAGTATGTGGACTCCTCAAGGACTCAACGACTCAGGAAGCACTTAT 3039
|||||||||||| | |||||||||||||||| ||| || ||||| |||||||||| ||||
Sbjct 1693 CAGAATGGGACCTCAAGTATGTGGACTCCTCCAGGGCTAAACGAATCAGGAAGCAGTTAT 1752
Query 3040 TACAGGTTATACTCGGGTCCTCAGAATCAGCAGTCACAGAGTTTGAGACATAGCCAACAA 3099
||| | |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct 1753 TACCGCTTATACTCGGGTCCTCAGAATCAGCAGTCAGAGAGTTTCAGACGTAGCCAACAA 1812
Score = 267 bits (144), Expect = 6e-70
Identities = 185/204 (91%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 72 CATT-AACGTTAACTCTATCCCGGAGAATTCGAGAGAAATCGTACAGG-CTATGAAGGAG 129
|||| || |||||| | ||||||||| || |||||| ||| |||| || ||||||||||
Sbjct 15 CATTGAA-GTTAACGCAATCCCGGAGTATACGAGAGCAATAGTAC-GGTCTATGAAGGAA 72
Query 130 ATCGTGAATTGCTCCGAACAAGAGATTTACG-ATATGCTTGTAGAATGCAACATGAACGC 188
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 73 ATCGTGAATTGCTCCGAACAAGAGATTTACGCA-ATGCTTGTTGAATGCAACATGAACGC 131
Query 189 TGACGAAGCCATGAATCGTCTTCTTTCTCAAGATAGTTTTCAGGAAGTGAAGAGTAAACG 248
|||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 132 TGACGAAGCCATCACTCGACTTCTTTCTCAAGATAGTTTCCAGGAAGTGAAGAGTAAACG 191
Query 249 AAACAAGAAGAAAGAGGCCAAGGA 272
| ||||||||||||||||||||||
Sbjct 192 AGACAAGAAGAAAGAGGCCAAGGA 215
Score = 152 bits (82), Expect = 2e-35
Identities = 113/128 (88%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 686 CTGGTCCTCCATTGAACAGAAATGTATTAAATGTTGAAACTAAGAGAATGCCAAAAAGCT 745
||||| || |||||||||| | ||| ||||||||||||||||||| |||||| |||||
Sbjct 347 CTGGTTCTTCATTGAACAGTGCTATATCAAATGTTGAAACTAAGAGAGTGCCAACAAGCT 406
Query 746 CAG-GTGAAGCAGTTCCTTCGTTATCTGTGCCATCTTCTAGGTTGATACCTGCTTGGGGA 804
||| | |||||||||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 407 CAGAG-GAAGCAGTTCCTTCGTTATCTGTGCCATCTTCTACGTTGGTAACTGCTTTGGGA 465
Query 805 TGTGGTAC 812
||||||||
Sbjct 466 TGTGGTAC 473
Score = 97.1 bits (52), Expect = 9e-19
Identities = 63/68 (93%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 855 AGCTTCATCAAACGAGAGTGTAACTAAAGCTCCTGTCAAGGATGATTGTCC-CTTACCTG 913
|||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 477 AGCTTCATCAAAAGATAGTGTAACTAAAGCTCCTGTCAAGGATGATTG-CCTCTTACCTG 535
Query 914 AGAGGCCA 921
||| ||||
Sbjct 536 AGAAGCCA 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156370361331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5