BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356389
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00160.1 | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502... 883 0.0
AT2G07717.1 | Symbols: | pseudogene, similar to NADH-ubiquinon... 171 1e-41
ATMG01280.1 | Symbols: ORF291 | Cytochrome C oxidase subunit II... 108 1e-22
AT2G07695.1 | Symbols: | Cytochrome C oxidase subunit II-like,... 108 1e-22
AT2G07728.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 69.4 5e-11
> ATMG00160.1 | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628
REVERSE LENGTH=783
Length=783
Score = 883 bits (478), Expect = 0.0
Identities = 480/481 (99%), Gaps = 0/481 (0%)
Strand=Plus/Plus
Query 183 AAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 AAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTC 278
Query 243 GATGTTCATTGCTATACCATCATTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GATGTTCATTGCTATACCATCATTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGA 338
Query 303 TCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 TCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGA 398
Query 363 CTATAACAGTTCCGATGAGCAGTCACTCACTTTTGACAGTTATATGATTCCAGAAGAAGA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CTATAACAGTTCCGATGAGCAGTCACTCACTTTTGACAGTTATATGATTCCAGAAGAAGA 458
Query 423 TCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAA 518
Query 483 AACTCATCTACGTATTATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTC 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 519 AACTCATCTACGTATTATTGTAACATCTGCTGATGTACCTCATAGTTGGGCTGTACCTTC 578
Query 543 CTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAAATCTCTATTTTGGTACA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAAATCTCTATTTTGGTACA 638
Query 603 ACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTAC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 ACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTAC 698
Query 663 G 663
|
Sbjct 699 G 699
> AT2G07717.1 | Symbols: | pseudogene, similar to NADH-ubiquinone
oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp
match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM
NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3).
(Field mustard) {Brassica campestris} | chr2:3418229-3424177
FORWARD LENGTH=5949
Length=5949
Score = 171 bits (92), Expect = 1e-41
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 91 TTGGGGACAGGTGCACGAACGACAACTCCAAACGTCACACATCCGCCGCCTACTTACCGT 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3387 TTGGGGACAGGTGCACGAACGACAACTCCAAACGTCACACATCCGCCGCCTACTTACCGT 3446
Query 151 TTAGGTGGCACCAGCGAGATCCAGCTAAGGACAAGGATTGT 191
||||||||||||||||||||||||||||||| || || |||
Sbjct 3447 TTAGGTGGCACCAGCGAGATCCAGCTAAGGAAAAAGAGTGT 3487
> ATMG01280.1 | Symbols: ORF291 | Cytochrome C oxidase subunit
II-like, transmembrane domain | chrM:318588-319463 REVERSE LENGTH=876
Length=876
Score = 108 bits (58), Expect = 1e-22
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 183 AAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTC 242
||| |||||||||||||||||||||||||||||||||||||| |||||| || |||| ||
Sbjct 219 AAGAATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATTTTTCCTTGTTTCATTTC 278
Query 243 GATGTTCATTGCT-ATACCATCATTTGCT 270
||| ||||||| | | |||||| ||||||
Sbjct 279 GATATTCATTGTTGA-ACCATCCTTTGCT 306
> AT2G07695.1 | Symbols: | Cytochrome C oxidase subunit II-like,
transmembrane domain | chr2:3346951-3347826 FORWARD LENGTH=876
Length=876
Score = 108 bits (58), Expect = 1e-22
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 183 AAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTC 242
||| |||||||||||||||||||||||||||||||||||||| |||||| || |||| ||
Sbjct 219 AAGAATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATTTTTCCTTGTTTCATTTC 278
Query 243 GATGTTCATTGCT-ATACCATCATTTGCT 270
||| ||||||| | | |||||| ||||||
Sbjct 279 GATATTCATTGTTGA-ACCATCCTTTGCT 306
> AT2G07728.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; Has 1 Blast hits to 1 proteins in 1 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:3453686-3456127
FORWARD LENGTH=861
Length=861
Score = 69.4 bits (37), Expect = 5e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 45 GCAGCCCCGTAGCCTCCCGCAGCCTCCTTTGACGGAG 81
|||||||||||||||||||||||||||||||||||||
Sbjct 444 GCAGCCCCGTAGCCTCCCGCAGCCTCCTTTGACGGAG 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5