BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356397

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46030.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   593    3e-169


> AT5G46030.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative 
(InterPro:IPR007808); Has 30201 Blast hits to 17322 
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other 
Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670117-18671373 
FORWARD LENGTH=732
Length=732

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 351/365 (96%), Gaps = 4/365 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAAGAGGAAATCAAGAGCAAAGCCTGCTCCTACGAAGCGAATGGATAAGCTTGAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  ATGGGAAAGAGGAAATCAAGAGCAAAGCCTGCTCCTACGAAGCGAATGGATAAGCTTGAC  194

Query  61   ACAATCTTTAGTTGTCCTTTCTGCAATCACGGCTCCAGTGTCGAATGCATAATTGATATG  120
            |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct  195  ACAATCTTTAGTTGTCCTTTCTGCAATCACGGGTCTAGTGTCGAATGCATCATTGATATG  254

Query  121  AAGCATCTGATTGGTAAAGCAGCTTGTAGAATCTGTGAAGAAAGCTTTAGTACTACTATC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  AAGCATCTGATTGGTAAAGCAGCTTGTAGAATCTGTGAAGAAAGCTTTAGTACTACTATC  314

Query  181  ACAGCTTTGACTGAAGCTATAGACATTTATAGCGAATGGATCGATGAGTGCGAGAGGGTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  315  ACAGCTTTGACTGAAGCTATAGACATTTATAGCGAATGGATCGATGAGTGCGAGAGGGTT  374

Query  241  AATACCGCGGAAGATGATGTTGTGCaagaagaagaagaagagg-aggaagtag-aagaag  298
            |||||||||||||||||||||||||||||||| |||||||| | || ||| || ||||||
Sbjct  375  AATACCGCGGAAGATGATGTTGTGCAAGAAGAGGAAGAAGAAGTAG-AAG-AGGAAGAAG  432

Query  299  aagaagaggaagaagaggatgatgaagaTGACCGTGTCTCTGTCAAAAGGAAGTATAATT  358
            |||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  433  AAGAGGAAGAAGAGGAGGATGATGAAGATGACCATGTCTCTGTCAAAAGGAAGTATAACT  492

Query  359  TCTGA  363
            |||||
Sbjct  493  TCTGA  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5