BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356399

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04620.1 | Symbols:  | Alba DNA/RNA-binding protein | chr3:1...   226    2e-58
  AT4G13615.1 | Symbols:  | Uncharacterised protein family SERF |...   189    2e-47


> AT3G04620.1 | Symbols:  | Alba DNA/RNA-binding protein | chr3:1255526-1256869 
REVERSE LENGTH=759
Length=759

 Score =  226 bits (122),  Expect = 2e-58
 Identities = 139/147 (95%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGATGGAAGTAGTAACACCGGCTCCGGCACAAATCCCATCGGAGAGGAACATCGTT  60
            |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  131  ATGGCGATGGAAGTAGCAACACCGGCTCCGGCACCAATCCCATCGGAGAGGAACATCGTT  190

Query  61   CTCGCTCCGGCAACAACAACAACAACCGCCACTGTTGAGAATCCACAAGAAGAACAGGAT  120
            ||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  191  CTCGCGCCTGCAACAACAACAACAACCGCCACTGTTGAGACTC-ACAAGAAGAACAGGAT  249

Query  121  C-AAGTTTCCAACACCAAGAAACCATT  146
            | ||||||||||||||||||| |||||
Sbjct  250  CCAAGTTTCCAACACCAAGAAGCCATT  276


> AT4G13615.1 | Symbols:  | Uncharacterised protein family SERF 
| chr4:7924326-7925140 FORWARD LENGTH=366
Length=366

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 159/184 (86%), Gaps = 13/184 (7%)
 Strand=Plus/Plus

Query  174  TGGAAGTCAGAGAGAGCGTGACCGTGAAAGAGC--C-GCT-G-G-TGAT--AA-GGGTAA  224
            |||||||||||||||||||||||||||||||||  | ||| | | || |  || ||||||
Sbjct  36   TGGAAGTCAGAGAGAGCGTGACCGTGAAAGAGCTGCCGCTCGTGCTGGTGGAAAGGGTAA  95

Query  225  GAATAGTAACAATGGTTTGAAGCCGGAGCAACGCCGTGAAAGAGATGGAAAAGCATTGCA  284
            |||| || || ||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  96   GAATGGTGACGATGGTTTGACGCCGGAGCAACGCCGTGAAAGAGATGGGAAAGCATTGCA  155

Query  285  AGAGAAGGCAGTTAAGAAAGCTGCTGAAGCTGC-GGCTGC-AGGTTCTAGTGGTGGAGCT  342
            |||||| || | ||||||||||||| ||||||| || ||| || |||| |||||| ||||
Sbjct  156  AGAGAAAGCGGCTAAGAAAGCTGCTCAAGCTGCAGG-TGCGAG-TTCTGGTGGTGCAGCT  213

Query  343  GGAG  346
            ||||
Sbjct  214  GGAG  217



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5