BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356408

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18280.2 | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050514-...   320    7e-87
  AT3G25400.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: NTP Pyrop...   278    4e-74


> AT5G18280.2 | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050514-6054875 
REVERSE LENGTH=2178
Length=2178

 Score =  320 bits (173),  Expect = 7e-87
 Identities = 213/232 (92%), Gaps = 3/232 (1%)
 Strand=Plus/Minus

Query  2    TGCCGTCCAATCTCACGCTTCGCCGTCTTATTACCTCCGTCAACAGAGTCGGATGTAGGA  61
            |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  347  TGCCGTCCAATCCCACGCTTCGCCGTCATCTTACCTCCGTCAACAGAGTCGGATGTAGGA  288

Query  62   GAATGGTTTCCAGACTCCAGGAGCTCAGTGGAAGAAGGCGAACGGTAGCGTATCTTACCG  121
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287  GAATGGTTACCAGACTCCAGGAGCTCAGTGGAAGAAGGCGAACGGTAGCGTATCTTACCG  228

Query  122  TTGCCGTTGTCGGTACCGGAGGACGCCGTGGCCTGCGGCGGATCTTGTCATGGCTCCAGA  181
            ||||||||| ||||||||||||||||||||| |||||||||||| ||| | |||||||||
Sbjct  227  TTGCCGTTGCCGGTACCGGAGGACGCCGTGGTCTGCGGCGGATCCTGTAACGGCTCCAGA  168

Query  182  TCGATGGTGGATTTGGTAGATGCGACTTGAATCGGTGGATTTTGATTCTGGA  233
            |||| |||| |||||| | | ||| |||||||||  |||||| ||| |||||
Sbjct  167  TCGACGGTGAATTTGGGAAA-GCGGCTTGAATCGCCGGATTT-GAT-CTGGA  119


> AT3G25400.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase 
MazG-related, RS21-C6 (InterPro:IPR011394), 
EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative 
catalytic core (InterPro:IPR004518); Has 1123 Blast 
hits to 1121 proteins in 452 species: Archae - 22; Bacteria 
- 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other 
Eukaryotes - 181 (source: NCBI BLink). | chr3:9213156-9214281 
FORWARD LENGTH=643
Length=643

 Score =  278 bits (150),  Expect = 4e-74
 Identities = 167/175 (95%), Gaps = 2/175 (1%)
 Strand=Plus/Plus

Query  298  GAAGAGGTTTCTCTTGAAACTTTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGAT  357
            |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  114  GAAGTGGTTTCTCTTCAAACTCTGAGTAAGAAAATGGATGATTTTGCAAAAGCTAGAGAT  173

Query  358  TGGGAGAAGTATCACAGCCCAAGAAATCTCCTTCTTG-TGATGGTGGGTGAAGTGGGAGA  416
            ||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||
Sbjct  174  TGGGAGAAGTATCACAGTCCAAGGAATCTCCTTCTTGCT-ATGGTGGGTGAAGTGGGAGA  232

Query  417  GCTATCAGAGATATTCCAATGGAAAGGAGAAGTGGCAAGAGGATGTCCAGATTGG  471
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  233  GCTATCAGAGATATTCCAATGGAAAGGAGAAGTAGCAAGAGGATGTCCAGATTGG  287



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5