BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356432

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45740.1 | Symbols:  | Ubiquitin domain-containing protein |...   508    1e-143


> AT5G45740.1 | Symbols:  | Ubiquitin domain-containing protein 
| chr5:18556975-18558097 REVERSE LENGTH=357
Length=357

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 305/320 (95%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTGTATTGGATCTTCTCATGCCAGAAATGAAGGCGGAGTAAAAAAGAAGAAAATC  60
            ||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct  1    ATGGGTTGTATCGGATCTTCTCAGGCCAGAAATGAAGGCGGAGCAAAAAGGAAGAAAATC  60

Query  61   AGGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTACGAATATG  120
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  61   ATGAAACCTAAACCGTGGGCACATACTGAGCCAATCACAAGGGCACAACTTACGAACATG  120

Query  121  CGTGAGGAATTTTGGGACACTTCTCCACACTATGGTGGTCAAAGAGAGATTTGGGAGGCA  180
            |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct  121  CGTGAGGAATTTTGGGACACCTCTCCACACTATGGTGGTCAAAGAGAGATATGGGAAGCA  180

Query  181  CTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCGCAAACTATTGTTGACAGTGCTGGT  240
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  181  CTTCGAGCTGCTGCTGAAGCTGACTTGAAACTAGCACAAACTATTGTTGACAGTGCAGGC  240

Query  241  GTGATTGTCCAGAACCGTGACCTAACATTGTGTTGGGATGAAAGAGGTGCTAGATATGAG  300
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  GTGATTGTTCAGAACCGTGACCTAACATTGTGCTGGGATGAAAGAGGTGCTAGATATGAG  300

Query  301  CTTCCTAGGTATGTTCTAAG  320
            ||||||||||| ||||||||
Sbjct  301  CTTCCTAGGTACGTTCTAAG  320



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5