BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356437
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45690.1 | Symbols: | Protein of unknown function (DUF1264)... 1208 0.0
> AT5G45690.1 | Symbols: | Protein of unknown function (DUF1264)
| chr5:18534999-18536316 REVERSE LENGTH=941
Length=941
Score = 1208 bits (654), Expect = 0.0
Identities = 716/746 (96%), Gaps = 4/746 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAGCGATGAGCGTCCGGGAGCGTATCCGGCACGTGACGGAGCAGAGAACTTA 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 58 ATGGCGTCGAGCGATGAGCGTCCAGGAGCGTATCCGGCACGTGACGGATCAGAGAACTTA 117
Query 61 CCTCCGGGAGATCCAAAGACGATGAAGACCGTGATGATGGATAAAGGAGCGGCGATGATG 120
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 118 CCTCCGGGAGATCCAAAGACGATGAAGACGGTGGTGATGGATAAAGGAGCGGCGATGATG 177
Query 121 CAATCGTTGAAACCGATCAAACAAATGAGTCTCCATTTGTGTTCTTTCGCTTGTTATGGT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 CAATCGTTGAAACCGATCAAACAGATGAGTCTCCATTTGTGTTCTTTCGCTTGTTATGGT 237
Query 181 CATGATCCTAGCCGTCAGATCGAAGTCAATTTCTATGTTCATCGACTCAACCAAGACTTT 240
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 238 CACGATCCTAGCCGTCAGATTGAAGTCAACTTCTATGTTCATCGACTCAACCAAGACTTT 297
Query 241 CTTCAGTGTGCTGTTTACGATTGCGACTCCTCTAAACCCCATCTCATCGGGATCGAGTAC 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTCAATGTGCTGTTTACGATTGCGACTCCTCTAAACCCCATCTCATCGGGATCGAGTAT 357
Query 301 ATTGTGTCGGAGAGGTTATTTGAGAATCTTGCGCCAGAGGAGCAAAAGCTTTGGCACTCT 360
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 358 ATTGTGTCGGAGAGGTTATTTGAGAGTCTTGATCCGGAGGAGCAAAAGCTTTGGCACTCT 417
Query 361 CATGACTATGAGATCCAAACAGGTCTTCTAATAACTCCAAGGGTCCCTGAGCTTGTAGCT 420
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 418 CATGACTATGAGATCCAAACAGGCCTTCTAGTAACTCCAAGGGTCCCTGAGCTTGTAGCT 477
Query 421 AAGCCAGAGCTTCAAAATATTGCCAAAACTTATGGGAAGTTTTGGTGCACTTGGCAGACC 480
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAGACAGAGCTTGAAAATATTGCCAAAACTTATGGGAAGTTTTGGTGCACTTGGCAGACC 537
Query 481 GATCGTGGGGATAAATTGCCACTAGGTGCACCATCACTGATGATGTCACCACAAGACGTG 540
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 538 GATCGCGGGGATAAATTGCCACTTGGTGCACCATCACTTATGATGTCACCACAAGACGTG 597
Query 541 AATATGGGAAAGATCAAGCCAGGGCTATTGAAGAAACGTGACGATGAGTATGGAATCTCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATATGGGAAAGATCAAGCCAGGGCTATTGAAGAAACGTGACGATGAGTATGGAATCTCG 657
Query 601 ACGGAATCTTTAAAGACGTCTCGAGTTGGGATTATGGGACCGGAGAGGAAAAAT-CTGAT 659
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| | |||
Sbjct 658 ACGGAATCTTTGAAGACGTCTCGAGTTGGAATTATGGGACCGGAGAAGAAAAATTC-GAT 716
Query 660 GGCTGATTATTGGGTTCATCACGGAAAAGGATTAGCGGTTGATATAATCGAAACTGAGAT 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 717 GGCTGATTATTGGGTTCATCACGGAAAAGGATTAGCGGTTGACATAATCGAAACTGAGAT 776
Query 720 GAAGAAATGTG-CTCCGTTCCCGTAA 744
| |||||| || ||||||||||||||
Sbjct 777 GCAGAAAT-TGGCTCCGTTCCCGTAA 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5