BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356449
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45580.1 | Symbols: | Homeodomain-like superfamily protein ... 1280 0.0
> AT5G45580.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:18481092-18482643 REVERSE LENGTH=840
Length=840
Score = 1280 bits (693), Expect = 0.0
Identities = 792/840 (94%), Gaps = 6/840 (1%)
Strand=Plus/Plus
Query 7 AGAGTGAATCTGGGAGGTTTAGGTTACGATAACGGCGGAGTTATGATGACTAGAGATCCT 66
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 4 AGAGTGAATCTCGGAGGTTTAGGTTACGATAATGGCGGAGTTATGATGACTAGAGATCCC 63
Query 67 AAACCCAGGCTCAGATGGACCGCCGATCTTCACGATCGCTTCGTCGACGCCGTCGCTAAG 126
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 64 AAACCTAGGCTCAGATGGACAGCCGATCTTCATGATCGCTTCGTCGACGCCGTCGCTAAG 123
Query 127 CTCGGTGGTGCTGACAAAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGT 186
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CTCGGTGGCGCTGACAAAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGT 183
Query 187 TTAACATTGTACCATCTCAAGAGCCATTTACAGAAGTATAGACTTGGTCAACAACAAGGG 246
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TTAACACTGTACCATCTCAAGAGCCATTTACAGAAGTATAGACTTGGTCAACAACAAGGC 243
Query 247 AAGAAACAAAATAGAACCGAACAAAACAAGGAAAATGCTGGAAGTTCATATGTGCATTTC 306
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 AAAAAACAAAATAGAACAGAACAAAACAAAGAAAATGCTGGAAGTTCATATGTGCATTTC 303
Query 307 GATAATTGTTCTCAAGGAGGAATCTCGAATGAATCAAGATTTGATAGCGGCAATCAAAGA 366
|| ||||||||||||||||||||||| ||||| ||||||||||||| | | ||||||||
Sbjct 304 GACAATTGTTCTCAAGGAGGAATCTCCAATGATTCAAGATTTGATAAC--C-ATCAAAGA 360
Query 367 CAAAGCGGGAATGTACCATTTGCAGAGGCAATGAGACATCAGGTCGATGCGCAACAACGG 426
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAAGCGGGAATGTACCTTTTGCTGAGGCAATGAGACATCAGGTCGATGCGCAACAACGG 420
Query 427 TTTCAAGAACAGCTCGAGGTGCAGAAAAAACTCCAGATGAGAATGGAGGCACAAGGAAAG 486
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TTTCAAGAACAACTCGAGGTGCAGAAAAAACTGCAGATGAGAATGGAGGCACAAGGAAAA 480
Query 487 TATTTGTTGACATTACTAGAGAAAGCACAGAAGAGCATACCTTGTGGTAATGTAGGAGAA 546
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 481 TATTTGTTGACATTACTAGAGAAAGCACAGAAGAGCTTACCTTGTGGTAATGCAGGGGAA 540
Query 547 ACAGACAAGGGTCAATTCTCGGATTTCAATCTCGCACTTTCGGGACTTGTAGGAAGTGAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAGACAAGGGTCAATTCTCGGATTTCAATCTCGCACTTTCGGGACTTGTAGGAAGTGAT 600
Query 607 CATAAGAACGAAAAGGTGGGTTTGGTTGCCAATATTTCACACCTTAATGCTG---ATTCT 663
| ||||||||| |||| |||||||||| | |||| ||||||||||||| || ||||
Sbjct 601 CGTAAGAACGAGAAGGCGGGTTTGGTTACTGATATCTCACACCTTAATGGTGGTGATTCC 660
Query 664 TCTGAAGATTTTCGGTTATGTGGAGAACAAGAGAAAATAGAAACCGGAGATGCATGTGTT 723
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTCAAGAGTTTCGGTTATGTGGAGAACAAGAGAAAATAGAAACCGGAGATGCATGTGTT 720
Query 724 AAACCGGAATCCGGATTTGTGCATTTCGATTTGAACTCCAAAAGTGGGTATGATCTCTTG 783
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 AAACCAGAATCCGGGTTTGTGCATTTTGATTTGAACTCCAAAAGTGGGTATGATCTCTTG 780
Query 784 AATTGTGGGAAATTTGGGATTGAAGTGAAGCCAAATGTGATTACAGATAGACATCAATAG 843
||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 781 AATTGTGGGAAATATGGGATTGAAGTGAAGCCAAATGTGATTGGAGATAGACTTCAATAG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5