BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356451
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45550.1 | Symbols: | Mob1/phocein family protein | chr5:18... 1081 0.0
AT4G19045.1 | Symbols: | Mob1/phocein family protein | chr4:10... 741 0.0
> AT5G45550.1 | Symbols: | Mob1/phocein family protein | chr5:18462162-18465097
FORWARD LENGTH=1027
Length=1027
Score = 1081 bits (585), Expect = 0.0
Identities = 628/649 (97%), Gaps = 2/649 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCTCTTTGGGCTT-GGGAGAAATCAAAAGACTTTCCGTCCTAAAAAGAGTGCACC 59
||||||||||||||| || || |||||||| ||||||||||| ||||| |||||||||||
Sbjct 123 ATGAGTCTCTTTGGG-TTAGGAAGAAATCAGAAGACTTTCCGACCTAAGAAGAGTGCACC 181
Query 60 TTCTGGAAGCAAGGGTGCTCAGCTTCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAA 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTCTGGAAGCAAGGGTGCACAGCTTCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAA 241
Query 120 CTTGAGAGAAGCTGTGAGACTTCCTCCAGGAGAGGATGCAAATGAATGGCTTGCTGTAAA 179
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 242 CTTGAGAGAAGCTGTAAGACTTCCTCCGGGAGAGGATGCAAATGAATGGCTTGCTGTAAA 301
Query 180 CACTGTGGATTTCTTTAATCAGGTGAATTTGCTATATGGCACCCTTACCGAGTTCTGCAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CACTGTGGATTTCTTTAATCAGGTGAATTTGCTATATGGCACCCTTACCGAGTTCTGCAC 361
Query 240 ACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAGTACGAGTACAGATGGGCAGATGG 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 ACCTGATAACTGTCCTACAATGACTGCTGGCCCAAAGTACGAGTATAGATGGGCAGATGG 421
Query 300 TGTACAGATCAAGAAGCCCATCGAGGTATCTGCTCCAAAGTATGTTGAGTACTTGATGGA 359
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 422 TGTACAGATCAAGAAGCCCATCGAGGTTTCTGCTCCAAAGTATGTCGAGTACTTGATGGA 481
Query 360 TTGGATCGAGACTCAACTCGATGATGAGACTTTATTTCCTCAAAGGCTTGGAGCACCATT 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTGGATCGAGACCCAACTCGATGATGAGACTTTATTTCCTCAAAGGCTTGGAGCACCATT 541
Query 420 TCCTCAGAACTTCAAGGATGTGGTGAAAACGATCTTCAAACGGCTATTCCGAGTTTATGC 479
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 TCCTCAGAACTTCAAAGATGTGGTGAAAACGATCTTTAAACGGCTATTCCGAGTTTATGC 601
Query 480 TCATATATATCATTCTCATTTCCAGAAAATCGTTAGCCTCAAAGAAGAAGCTCATCTCAA 539
||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 602 TCACATATACCACTCTCATTTCCAGAAAATCGTTAGCCTAAAAGAAGAAGCTCATCTCAA 661
Query 540 CACTTGCTTCAAACATTTCATCCTCTTTACTCATGAGTTTGGACTGATAGACAAGAAAGA 599
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 662 CACTTGCTTCAAACACTTCATCCTCTTTACTCATGAATTTGGACTGATAGACAAGAAAGA 721
Query 600 ACTCGCGCCTCTACAAGAGCTCATAGAATCTATCATTTCACCTTATTGA 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ACTCGCGCCTCTACAAGAGCTCATAGAATCTATCATTTCACCTTATTGA 770
> AT4G19045.1 | Symbols: | Mob1/phocein family protein | chr4:10438024-10439900
REVERSE LENGTH=949
Length=949
Score = 741 bits (401), Expect = 0.0
Identities = 566/647 (87%), Gaps = 6/647 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCTCTTTGGGCTTGGGAGAAATCAAAAGACTTTCCGTCCTAAAAAGAGTGCACCT 60
|||||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 113 ATGAGTCTATTCGGGCTTGGAAGAAATCAAAAGACTTTCCGTCCTAAGAAGAGCGCACCA 172
Query 61 TCTGGAAGCAAGGGTGCTCAGCTTCGAAAGCATATAGATGCCACCCTAGGAAGTGGGAA- 119
|| |||| |||||| || |||||||||||||||||||||| || |||| ||||| ||
Sbjct 173 TCAGGAACCAAGGGAGCAGAGCTTCGAAAGCATATAGATGCAACTTTAGGTAGTGGTAAT 232
Query 120 CTTGAGAGAAGCTGTGAGACTTCCTCCAGGAGAGGATGCAAATGAATGGCTTGCTGTAAA 179
||| |||||||| || | ||||||||| ||||||||| ||| ||||||||||| || ||
Sbjct 233 CTT-AGAGAAGCCGTCAAACTTCCTCCGGGAGAGGATTTAAACGAATGGCTTGCAGTTAA 291
Query 180 CACTGTGGATTTCTTTAATCAGGTGAATTTGCTATATGGCACCCTTACCGAGTTCTGCAC 239
||||||||||||||| |||||||||||| || ||| ||| || ||||||||||| |||||
Sbjct 292 CACTGTGGATTTCTTCAATCAGGTGAATCTGTTATTTGGTACACTTACCGAGTTTTGCAC 351
Query 240 ACCTGATAACTGTCCTACAATGACTGCTGG-CCCAAAGTACGAGTACAGATGGGCAGATG 298
|| || |||||| |||||||||||||||| ||| |||||||| ||||||||||| ||||
Sbjct 352 CCCGGAGAACTGTTCTACAATGACTGCTGGTCCC-AAGTACGAATACAGATGGGCCGATG 410
Query 299 GTGTACAGATCAAGAAGCCCATCGAGGTATCTGCTCCAAAGTATGTTGAGTACTTGATGG 358
||||||| ||||||||||| || ||||| || ||||||||||||||||| ||||||||||
Sbjct 411 GTGTACAAATCAAGAAGCCTATTGAGGTTTCAGCTCCAAAGTATGTTGAATACTTGATGG 470
Query 359 ATTGGATCGAGACTCAACTCGATGATGAGACTTTATTTCCTCAAAGGCTTGGAGCACCAT 418
||||||||||||| ||||||||||||||||| |||||||||||| ||||| ||| | |
Sbjct 471 ATTGGATCGAGACACAACTCGATGATGAGACCATATTTCCTCAAAAACTTGGTGCAGCTT 530
Query 419 TTCCT-CAGAACTTCAAGGATGTGGTGAAAACGATCTTCAAACGGCTATTCCGAGTTTAT 477
||||| || ||||||||||| |||||||| || ||||| ||||| ||||||||||||||
Sbjct 531 TTCCTCCA-AACTTCAAGGAAGTGGTGAAGACAATCTTTAAACGACTATTCCGAGTTTAC 589
Query 478 GCTCATATATATCATTCTCATTTCCAGAAAATCGTTAGCCTCAAAGAAGAAGCTCATCTC 537
|| || ||||| || ||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 590 GCACACATATACCACTCTCATTTCCAGAAAATAGTTAGTCTCAAAGAGGAAGCTCATCTC 649
Query 538 AACACTTGCTTCAAACATTTCATCCTCTTTACTCATGAGTTTGGACTGATAGACAAGAAA 597
||||||||||||||||| ||||||||||| ||||||||||||| || || |||||||||
Sbjct 650 AACACTTGCTTCAAACACTTCATCCTCTTCACTCATGAGTTTGTTCTCATTGACAAGAAA 709
Query 598 GAACTCGCGCCTCTACAAGAGCTCATAGAATCTATCATTTCACCTTA 644
|||||||| ||||| ||||| |||||||||||||||||| |||||||
Sbjct 710 GAACTCGCTCCTCTTCAAGAACTCATAGAATCTATCATTGCACCTTA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5