BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356455
Length=2307
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45520.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1653 0.0
> AT5G45520.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:18449509-18453012 REVERSE LENGTH=3504
Length=3504
Score = 1653 bits (895), Expect = 0.0
Identities = 1326/1530 (87%), Gaps = 45/1530 (3%)
Strand=Plus/Plus
Query 330 ATCTTGGTGGGTTCGGT-TCAGAGAAAAACTT-aaaaaaaTTTGTAAGGTGAAGAACGAG 387
|||||||||||||| || |||||| || || |||| |||| |||||| |||||| |||
Sbjct 138 ATCTTGGTGGGTTC-GTGTCAGAG-GAAGTTTGAAAAGAATTGGTAAGGCGAAGAAGGAG 195
Query 388 GC-AACAAACCATGCAAGCGATAGTAAAGACAGTCAAGGTGGAAGCAGAAGAATCATGCG 446
|| | ||| |||| || || ||| || |||||||||||||||||||||| | |||
Sbjct 196 GCTTTC-AACAATGCTAGTGACAGTGGAGGTAGTCAAGGTGGAAGCAGAAGAAGCGTGCA 254
Query 447 ATACACTGACGAAGAT--GAAG-ATGCAGACCTCGACATCCGGAAATTGCAGAGTGACAT 503
| ||| ||| |||||| ||| ||| ||||||||| |||||||||||||||| ||||||
Sbjct 255 AAACATTGAAGAAGATCAAAAGAATGAAGACCTCGAGATCCGGAAATTGCAGAATGACAT 314
Query 504 TGGTCAGATGATATCTGCATTTAAGAATTGGACTCAGTTTCAAAAC-AATATGAGCAAGT 562
| ||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||
Sbjct 315 TCGTCAGATGATAGCTGCATTTAAGAATTTAACTCAGTTTC-AAACTGATATGAGCAAGA 373
Query 563 CGTTGGAGAATGATCTTCGTTCAAGTATGGTT-GGAGCAATACTACAGAAGACGGGTTCA 621
|||||| |||||||||||||| || ||| |||||||||||| |||| | ||
Sbjct 374 ATTTGGAGCGTGATCTTCGTTCAACTA-AGTTAATAGCAATACTACAAAAGAAGAACTCG 432
Query 622 ATCAAG-TCCCGCACTCAGGATCTCAAAGAAATCAGAAGAAAGATCTCCGCCTTGAAGTG 680
|| | |||||| |||| | | |||| ||||||||||||||| ||||||||||||||||
Sbjct 433 TTC-GGATCCCGCTCTCACGTTGTCAAGGAAATCAGAAGAAAGGTCTCCGCCTTGAAGTG 491
Query 681 CCAGATCCCATCATCGCTCTACAAACAATCATCCAGGGTGTTAAGCATCACGGAATCTCT 740
|||||||||||||| |||| ||||||||||||| || | ||||||||||||| ||||
Sbjct 492 CCAGATCCCATCATTGCTCCACAAACAATCATCAAGAAAGATAAGCATCACGGATTCTCA 551
Query 741 AACCGATGAGGATATTGATGAGATCAATGAGACCGGGAGCGACATATACTTGCCCGACCT 800
||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| | |||
Sbjct 552 AACCGCTGAGGAAAATGATGAGATCAGTGAGACCGGGATTGACATATACTTGCCGGGCCT 611
Query 801 CCACGTT-TCTGAAGATTTC-AAACATTCCTCAGGTTTTGAAGACGTTGTAGAGAAATTT 858
|||| || |||||| | ||| |||| |||||| | ||||||||| ||||| |||||||||
Sbjct 612 CCAC-TTCTCTGAAAAATTCAAAAC-TTCCTCTGCTTTTGAAGAAGTTGTTGAGAAATTT 669
Query 859 CAAGGCCTTGATGACTTCACTCAAAAGCTCTGCTTG-TTGTCCTTCGCCGTGTTCCCGGA 917
||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||
Sbjct 670 CAAGGCCTTGATGACTTCACTCAGAAGCTTTGCTTGCTT-TCCTTCGCCGTGTTCCCGGA 728
Query 918 AAACAGAGAGGTTACAAGGACAATGTTGATGTATTGGTGGATCGGAGAAGGTTTCATCGA 977
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 729 AAACAGAGAGGTTAAAAGGACAATGTTGATGTATTGGTGGATCGGAGAAGGTTTTATC-A 787
Query 978 -TTGTGATGATTCTGAAAACTCAGTAACGAGAATTCTTGATGCATTCTCAGCa-aaaaaa 1035
||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||
Sbjct 788 GCTGTGATGATTCTGAAAACTTAGTAACGAGAATTCTTGATTCATTCTCAG-ACAAAAAA 846
Query 1036 TTACTTGAGCCGGTCGAAGATGAGAGGAAACTGCTACCAAATAGTTATAAGATGGAGCCT 1095
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 847 TTACTTGAGCCGGTCGAAGATGAGAGGAAACTGCTACCAAGTAGTTATAAGATGGAGCCT 906
Query 1096 CATGTGCATTCTGCAGTTATATACTTAGCCAAAGAAATGGATCTATTTGAACTCTACAAC 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 907 CATGTGCATTCTGCAGTTATATACTTAGCCAAAGAAATGGATCTATTTGAACTATATAAC 966
Query 1156 CATAATGGGAAGCTTATCATGAAAAAATCATCGAAGAAAAAGGTCTGCCTAGTAAAAGGT 1215
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 967 AAGAATGGGAAGCTTATCATGAAGAAATCATCGAAGAAAAAGGTCTGCCTAGTAAAAGGT 1026
Query 1216 TCCTCGTTGCTACGAGACGCAAAAACATCTGCAATGAAACCGAAAACATTGCAGACGGTT 1275
||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||
Sbjct 1027 TCCTCGTTGCTACGAGACGCAAAAACATCTGTTATGGAACCAAAAACCTTGCAGACGGTT 1086
Query 1276 TTCAATTCCTCTGAACGGTTCCCTGATTTCACATTCAAGTGGTTTCCGTTAATGGATTCA 1335
||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||
Sbjct 1087 TTCAATTCCTCTGAACGGTACCCAGACTTCACATTCAAGTGGTTTCCATTAATGGATTCA 1146
Query 1336 ATTAGAGTGCTTTATTTAGGAAGATGGGAGCGGATGGCTGAGCGCCACATTGAAGTTGAG 1395
||||||||||||| || ||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1147 CTTAGAGTGCTTTACTTGGGAAGATGGGAGCAGACAGCTAAGCGCCACATTGAAGTTGAG 1206
Query 1396 AGCACGGAGTTTCTTAAAAATATGAAGTCTCTGAAGAATCTGAGGCTTGCAAGTTTTCAA 1455
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1207 AGCACAGAGTTTCTTAAAAATATGAAGTCCCTGAAGAATCTGAGGCTTGCAAGTTTTCAA 1266
Query 1456 GGGATCTC-AGGAATCAAAAAGA-TCGATAACTCAATTTGTGCGCTCCAAAAATT-GATG 1512
|||||||| |||| | | |||| |||| ||||||||||| || |||| | || | ||
Sbjct 1267 GGGATCTCGAGGA-T-AGAAAGGCTCGAGAACTCAATTTGCGCACTCCCCGAGTTAG-TG 1323
Query 1513 ATCTTGGATCTTAGAGCATGCTACGATCTACAGGTTCTTCCTAACGATATAGGCTCACTT 1572
||||||||||||| |||||||||| ||||| |||||||||||| |||||||||| ||
Sbjct 1324 ATCTTGGATCTTAAAGCATGCTACAATCTAGAGGTTCTTCCTAGTGATATAGGCTTGTTT 1383
Query 1573 GAGAATCTGATTTACTTGGATGTATCAGAATGCCT-TAAGCTAGATTGCATGCCTGATAG 1631
||||| ||||||||||||||||||||||| ||| | || ||||||| |||||||| | |
Sbjct 1384 GAGAAACTGATTTACTTGGATGTATCAGAGTGC-TATATGCTAGATCGCATGCCTAAGGG 1442
Query 1632 GTTTGAAAAACTCTC-AGGATTACAGGTTCTTAAGGGATTTGTGATTAGTCAGTCAGATG 1690
| ||| ||||||||| || |||||| ||||| || ||||||||||||||| |||| |||
Sbjct 1443 GATTGCAAAACTCTCCAG-ATTACAAGTTCTGAAAGGATTTGTGATTAGTGAGTCGGATC 1501
Query 1691 ATGAACACAATTGTGCAGTTAAACACCTGGTGAATCTGAGGAAGCTAAGCATAACCA-TA 1749
||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||
Sbjct 1502 ATGAAAATAATTGTGCAGTTAAACATCTGGTGAATCTAAGGAAGCTAAGCATAAC-AGTA 1560
Query 1750 AA-AAATTAC-CGTTTCAAGGCAGAAAATCTAATTGAGTCATTGAGAG-ACCTCAAGCAA 1806
|| |||| || | ||| |||| |||| ||| || ||||| |||| || || || || |
Sbjct 1561 AACAAAT-ACTCTTTT-AAGGTGGAAAGTCTGATGGAGTCGTTGACAGGAC-TCCAGGGA 1617
Query 1807 CTTGAGAGTCTGACA-TTCGCATGGAGAGC 1835
||||||||||||| | || || ||| ||||
Sbjct 1618 CTTGAGAGTCTGAAAATT-GCGTGGGGAGC 1646
Score = 545 bits (295), Expect = 5e-154
Identities = 372/408 (91%), Gaps = 10/408 (2%)
Strand=Plus/Plus
Query 1877 AAGCAAAACT-GTTAATGGGAATGTGCAACCAAACCAAGAAATGGGGAATAGGATGGCAA 1935
|||||||| | ||||| ||||| | | |||||||||||||||||||||||||||||||||
Sbjct 3086 AAGCAAAA-TGGTTAACGGGAAGGGGAAACCAAACCAAGAAATGGGGAATAGGATGGCAA 3144
Query 1936 GAAGAT-CAATCAATAGATGATACCTATA-AATTCCCTGATCGTTTGAAGAAGTTGGAGC 1993
|||||| || | | ||||||| ||||||| | || ||| | |||||||||||||||||
Sbjct 3145 GAAGATCCAGT-AGTAGATGACACCTATACACTT-CCTTCTAATTTGAAGAAGTTGGAGC 3202
Query 1994 TAGAATGTTTCCCTGAAACAGAACCTCCGAGTTGGTTAAATCCCAAAGATCTTAAAGAGC 2053
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |
Sbjct 3203 TAGAATGTTTCCCTGAAACAAAACCTCCGAGTTGGTTAAATCCCAAAGATCTGAAAAATC 3262
Query 2054 TTAAAAAACTCTCCATCAAAGGAGGAAAACTTAGTCGTAT-GAGTGATGAAAGTCGAAAC 2112
||||||| |||||||||||||||||||||||||| || || | ||||||| ||||||| |
Sbjct 3263 TTAAAAAGCTCTCCATCAAAGGAGGAAAACTTAGCCGAATCG-GTGATGAGAGTCGAATC 3321
Query 2113 ACAGAAGACAAATGGGCCGTTGAGATCTTGCGTTTGAAGTATCTGCATGAATTCAAGGTT 2172
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3322 ACAGAAGATAAATGGGACGTTGAGATCTTGCGTTTGAAGTATCTGCATGAATTCAAGGTT 3381
Query 2173 GAGTGGAGAGATTTG-AAAGCTCTGTTTCCAAAAATGACACTGTTGGAGAAATATAAATG 2231
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3382 GAGTGGAGAGATTTGCAAA-CTCTGTTTCCAAAAATGACACTGTTGGAGAAATATAAATG 3440
Query 2232 CCCTAAAATCGCATTCTGTCCAACAGATGGTAATGGAGTCTGGAGGTC 2279
||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 3441 CCCCAAAATCGCATTCTGTCCCACAGATGGTAATGGAGTCTGGACGTC 3488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114507443145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5