BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg356455 Length=2307 Score E Sequences producing significant alignments: (Bits) Value AT5G45520.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1653 0.0 > AT5G45520.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:18449509-18453012 REVERSE LENGTH=3504 Length=3504 Score = 1653 bits (895), Expect = 0.0 Identities = 1326/1530 (87%), Gaps = 45/1530 (3%) Strand=Plus/Plus Query 330 ATCTTGGTGGGTTCGGT-TCAGAGAAAAACTT-aaaaaaaTTTGTAAGGTGAAGAACGAG 387 |||||||||||||| || |||||| || || |||| |||| |||||| |||||| ||| Sbjct 138 ATCTTGGTGGGTTC-GTGTCAGAG-GAAGTTTGAAAAGAATTGGTAAGGCGAAGAAGGAG 195 Query 388 GC-AACAAACCATGCAAGCGATAGTAAAGACAGTCAAGGTGGAAGCAGAAGAATCATGCG 446 || | ||| |||| || || ||| || |||||||||||||||||||||| | ||| Sbjct 196 GCTTTC-AACAATGCTAGTGACAGTGGAGGTAGTCAAGGTGGAAGCAGAAGAAGCGTGCA 254 Query 447 ATACACTGACGAAGAT--GAAG-ATGCAGACCTCGACATCCGGAAATTGCAGAGTGACAT 503 | ||| ||| |||||| ||| ||| ||||||||| |||||||||||||||| |||||| Sbjct 255 AAACATTGAAGAAGATCAAAAGAATGAAGACCTCGAGATCCGGAAATTGCAGAATGACAT 314 Query 504 TGGTCAGATGATATCTGCATTTAAGAATTGGACTCAGTTTCAAAAC-AATATGAGCAAGT 562 | ||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||| Sbjct 315 TCGTCAGATGATAGCTGCATTTAAGAATTTAACTCAGTTTC-AAACTGATATGAGCAAGA 373 Query 563 CGTTGGAGAATGATCTTCGTTCAAGTATGGTT-GGAGCAATACTACAGAAGACGGGTTCA 621 |||||| |||||||||||||| || ||| |||||||||||| |||| | || Sbjct 374 ATTTGGAGCGTGATCTTCGTTCAACTA-AGTTAATAGCAATACTACAAAAGAAGAACTCG 432 Query 622 ATCAAG-TCCCGCACTCAGGATCTCAAAGAAATCAGAAGAAAGATCTCCGCCTTGAAGTG 680 || | |||||| |||| | | |||| ||||||||||||||| |||||||||||||||| Sbjct 433 TTC-GGATCCCGCTCTCACGTTGTCAAGGAAATCAGAAGAAAGGTCTCCGCCTTGAAGTG 491 Query 681 CCAGATCCCATCATCGCTCTACAAACAATCATCCAGGGTGTTAAGCATCACGGAATCTCT 740 |||||||||||||| |||| ||||||||||||| || | ||||||||||||| |||| Sbjct 492 CCAGATCCCATCATTGCTCCACAAACAATCATCAAGAAAGATAAGCATCACGGATTCTCA 551 Query 741 AACCGATGAGGATATTGATGAGATCAATGAGACCGGGAGCGACATATACTTGCCCGACCT 800 ||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| | ||| Sbjct 552 AACCGCTGAGGAAAATGATGAGATCAGTGAGACCGGGATTGACATATACTTGCCGGGCCT 611 Query 801 CCACGTT-TCTGAAGATTTC-AAACATTCCTCAGGTTTTGAAGACGTTGTAGAGAAATTT 858 |||| || |||||| | ||| |||| |||||| | ||||||||| ||||| ||||||||| Sbjct 612 CCAC-TTCTCTGAAAAATTCAAAAC-TTCCTCTGCTTTTGAAGAAGTTGTTGAGAAATTT 669 Query 859 CAAGGCCTTGATGACTTCACTCAAAAGCTCTGCTTG-TTGTCCTTCGCCGTGTTCCCGGA 917 ||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||| Sbjct 670 CAAGGCCTTGATGACTTCACTCAGAAGCTTTGCTTGCTT-TCCTTCGCCGTGTTCCCGGA 728 Query 918 AAACAGAGAGGTTACAAGGACAATGTTGATGTATTGGTGGATCGGAGAAGGTTTCATCGA 977 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 729 AAACAGAGAGGTTAAAAGGACAATGTTGATGTATTGGTGGATCGGAGAAGGTTTTATC-A 787 Query 978 -TTGTGATGATTCTGAAAACTCAGTAACGAGAATTCTTGATGCATTCTCAGCa-aaaaaa 1035 ||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||| Sbjct 788 GCTGTGATGATTCTGAAAACTTAGTAACGAGAATTCTTGATTCATTCTCAG-ACAAAAAA 846 Query 1036 TTACTTGAGCCGGTCGAAGATGAGAGGAAACTGCTACCAAATAGTTATAAGATGGAGCCT 1095 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 847 TTACTTGAGCCGGTCGAAGATGAGAGGAAACTGCTACCAAGTAGTTATAAGATGGAGCCT 906 Query 1096 CATGTGCATTCTGCAGTTATATACTTAGCCAAAGAAATGGATCTATTTGAACTCTACAAC 1155 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 907 CATGTGCATTCTGCAGTTATATACTTAGCCAAAGAAATGGATCTATTTGAACTATATAAC 966 Query 1156 CATAATGGGAAGCTTATCATGAAAAAATCATCGAAGAAAAAGGTCTGCCTAGTAAAAGGT 1215 | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 967 AAGAATGGGAAGCTTATCATGAAGAAATCATCGAAGAAAAAGGTCTGCCTAGTAAAAGGT 1026 Query 1216 TCCTCGTTGCTACGAGACGCAAAAACATCTGCAATGAAACCGAAAACATTGCAGACGGTT 1275 ||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||| Sbjct 1027 TCCTCGTTGCTACGAGACGCAAAAACATCTGTTATGGAACCAAAAACCTTGCAGACGGTT 1086 Query 1276 TTCAATTCCTCTGAACGGTTCCCTGATTTCACATTCAAGTGGTTTCCGTTAATGGATTCA 1335 ||||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||| Sbjct 1087 TTCAATTCCTCTGAACGGTACCCAGACTTCACATTCAAGTGGTTTCCATTAATGGATTCA 1146 Query 1336 ATTAGAGTGCTTTATTTAGGAAGATGGGAGCGGATGGCTGAGCGCCACATTGAAGTTGAG 1395 ||||||||||||| || ||||||||||||| || ||| |||||||||||||||||||| Sbjct 1147 CTTAGAGTGCTTTACTTGGGAAGATGGGAGCAGACAGCTAAGCGCCACATTGAAGTTGAG 1206 Query 1396 AGCACGGAGTTTCTTAAAAATATGAAGTCTCTGAAGAATCTGAGGCTTGCAAGTTTTCAA 1455 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1207 AGCACAGAGTTTCTTAAAAATATGAAGTCCCTGAAGAATCTGAGGCTTGCAAGTTTTCAA 1266 Query 1456 GGGATCTC-AGGAATCAAAAAGA-TCGATAACTCAATTTGTGCGCTCCAAAAATT-GATG 1512 |||||||| |||| | | |||| |||| ||||||||||| || |||| | || | || Sbjct 1267 GGGATCTCGAGGA-T-AGAAAGGCTCGAGAACTCAATTTGCGCACTCCCCGAGTTAG-TG 1323 Query 1513 ATCTTGGATCTTAGAGCATGCTACGATCTACAGGTTCTTCCTAACGATATAGGCTCACTT 1572 ||||||||||||| |||||||||| ||||| |||||||||||| |||||||||| || Sbjct 1324 ATCTTGGATCTTAAAGCATGCTACAATCTAGAGGTTCTTCCTAGTGATATAGGCTTGTTT 1383 Query 1573 GAGAATCTGATTTACTTGGATGTATCAGAATGCCT-TAAGCTAGATTGCATGCCTGATAG 1631 ||||| ||||||||||||||||||||||| ||| | || ||||||| |||||||| | | Sbjct 1384 GAGAAACTGATTTACTTGGATGTATCAGAGTGC-TATATGCTAGATCGCATGCCTAAGGG 1442 Query 1632 GTTTGAAAAACTCTC-AGGATTACAGGTTCTTAAGGGATTTGTGATTAGTCAGTCAGATG 1690 | ||| ||||||||| || |||||| ||||| || ||||||||||||||| |||| ||| Sbjct 1443 GATTGCAAAACTCTCCAG-ATTACAAGTTCTGAAAGGATTTGTGATTAGTGAGTCGGATC 1501 Query 1691 ATGAACACAATTGTGCAGTTAAACACCTGGTGAATCTGAGGAAGCTAAGCATAACCA-TA 1749 ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| | || Sbjct 1502 ATGAAAATAATTGTGCAGTTAAACATCTGGTGAATCTAAGGAAGCTAAGCATAAC-AGTA 1560 Query 1750 AA-AAATTAC-CGTTTCAAGGCAGAAAATCTAATTGAGTCATTGAGAG-ACCTCAAGCAA 1806 || |||| || | ||| |||| |||| ||| || ||||| |||| || || || || | Sbjct 1561 AACAAAT-ACTCTTTT-AAGGTGGAAAGTCTGATGGAGTCGTTGACAGGAC-TCCAGGGA 1617 Query 1807 CTTGAGAGTCTGACA-TTCGCATGGAGAGC 1835 ||||||||||||| | || || ||| |||| Sbjct 1618 CTTGAGAGTCTGAAAATT-GCGTGGGGAGC 1646 Score = 545 bits (295), Expect = 5e-154 Identities = 372/408 (91%), Gaps = 10/408 (2%) Strand=Plus/Plus Query 1877 AAGCAAAACT-GTTAATGGGAATGTGCAACCAAACCAAGAAATGGGGAATAGGATGGCAA 1935 |||||||| | ||||| ||||| | | ||||||||||||||||||||||||||||||||| Sbjct 3086 AAGCAAAA-TGGTTAACGGGAAGGGGAAACCAAACCAAGAAATGGGGAATAGGATGGCAA 3144 Query 1936 GAAGAT-CAATCAATAGATGATACCTATA-AATTCCCTGATCGTTTGAAGAAGTTGGAGC 1993 |||||| || | | ||||||| ||||||| | || ||| | ||||||||||||||||| Sbjct 3145 GAAGATCCAGT-AGTAGATGACACCTATACACTT-CCTTCTAATTTGAAGAAGTTGGAGC 3202 Query 1994 TAGAATGTTTCCCTGAAACAGAACCTCCGAGTTGGTTAAATCCCAAAGATCTTAAAGAGC 2053 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | | Sbjct 3203 TAGAATGTTTCCCTGAAACAAAACCTCCGAGTTGGTTAAATCCCAAAGATCTGAAAAATC 3262 Query 2054 TTAAAAAACTCTCCATCAAAGGAGGAAAACTTAGTCGTAT-GAGTGATGAAAGTCGAAAC 2112 ||||||| |||||||||||||||||||||||||| || || | ||||||| ||||||| | Sbjct 3263 TTAAAAAGCTCTCCATCAAAGGAGGAAAACTTAGCCGAATCG-GTGATGAGAGTCGAATC 3321 Query 2113 ACAGAAGACAAATGGGCCGTTGAGATCTTGCGTTTGAAGTATCTGCATGAATTCAAGGTT 2172 |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3322 ACAGAAGATAAATGGGACGTTGAGATCTTGCGTTTGAAGTATCTGCATGAATTCAAGGTT 3381 Query 2173 GAGTGGAGAGATTTG-AAAGCTCTGTTTCCAAAAATGACACTGTTGGAGAAATATAAATG 2231 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3382 GAGTGGAGAGATTTGCAAA-CTCTGTTTCCAAAAATGACACTGTTGGAGAAATATAAATG 3440 Query 2232 CCCTAAAATCGCATTCTGTCCAACAGATGGTAATGGAGTCTGGAGGTC 2279 ||| ||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 3441 CCCCAAAATCGCATTCTGTCCCACAGATGGTAATGGAGTCTGGACGTC 3488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114507443145 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5