BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356466

Length=2106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45460.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   230    6e-59


> AT5G45460.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: Protein of unknown function (DUF594) 
(TAIR:AT5G45470.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:18416614-18419481 REVERSE 
LENGTH=2868
Length=2868

 Score =  230 bits (124),  Expect = 6e-59
 Identities = 360/469 (77%), Gaps = 36/469 (8%)
 Strand=Plus/Plus

Query  21   ACATATCAAAGATGTC-TGGGAC-GCCTGGAACATCAGAGGAATTGTAATTCTCAGTCTC  78
            |||||||||||||| | |||||| |  |||||||| |||||||   |  |||| ||||| 
Sbjct  237  ACATATCAAAGATG-CGTGGGACAG-ATGGAACATTAGAGGAACAATCTTTCTAAGTCT-  293

Query  79   T-CGATTC-AGACAATTCTCATCAT-CTTAGCACCATTGAGGAAAAGAACATCCAA-CAG  134
            | |  ||| || |  |||||||  | |||  | ||||| |||||| ||||| ||||  ||
Sbjct  294  TACCCTTCAAG-CCTTTCTCAT-TTGCTTCTCTCCATTAAGGAAACGAACA-CCAAGAAG  350

Query  135  GTTC-CTGGCTT-TAGTCCTGTGGTTGTCTTATCTCTTAGCAGATTGGTCTGCAAACTTT  192
            |  | || | || | ||| | ||||  |||||||||||||||||||||||||| || |||
Sbjct  351  G--CACTTGATTATCGTCATTTGGTCCTCTTATCTCTTAGCAGATTGGTCTGCTAA-TTT  407

Query  193  -G-TGATTGGACTTATCGCCAAGAATCAAGGGAAAGAAT-TGAAGCCAGATGATCCTCCT  249
             | || |||| || ||| | ||||| ||||| |||| || | || || ||||| ||||| 
Sbjct  408  CGCTG-TTGGTCTCATCTCTAAGAACCAAGGTAAAG-ATCTCAAACCTGATGACCCTCCA  465

Query  250  CAAGACCAGCAGCTCATGGCTTTGTGGGCACCGTTCTTGCTCTTACATCTTGGTGGACCA  309
            || ||| |  ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  466  CAGGACAAAAAGCTCATGGCTTTATGGGCACCATTCTTGCTCTTACATCTTGGTGGACCA  525

Query  310  GACACAATCACTGCATACTCTCTTGAGGACAATGCTCTTTGGCACAGACAC-TTTCTTGG  368
            ||||| || || || | | | ||||| || || |||||||||| | || |  ||| ||||
Sbjct  526  GACACTATAACAGCTTTCGCGCTTGAAGATAACGCTCTTTGGCTCCGAAATGTTT-TTGG  584

Query  369  CCTGG-CTTTACAGGCTCTTTCAGGTG-CATATGTTGTTATCCAATCTCTACCTAATC-C  425
             || | |||| |||||  || | |||| | ||||| ||| |||| ||||| || |||  |
Sbjct  585  GCTTGTCTTT-CAGGCAATTGCTGGTGTC-TATGTGGTTCTCCAGTCTCTGCCCAATAGC  642

Query  426  TCTTTGGGTGATCA-TACTGCTTT-TGTTCATTGCTGGGACCT-TAAAG  471
             |||||||| | || |||| |||  |||||||| ||||||| | |||||
Sbjct  643  -CTTTGGGTAA-CAATACT-CTTAGTGTTCATTTCTGGGAC-TATAAAG  687



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 104417133600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5