BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356470
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45500.1 | Symbols: | RNI-like superfamily protein | chr5:1... 577 2e-163
> AT5G45500.1 | Symbols: | RNI-like superfamily protein | chr5:18432458-18435469
REVERSE LENGTH=2626
Length=2626
Score = 577 bits (312), Expect = 2e-163
Identities = 502/590 (85%), Gaps = 28/590 (5%)
Strand=Plus/Plus
Query 553 ATTGTTTGCTTGCCCGGCATCCATGCAAATGAAGAAGACCTCAAAAGACTCGCCGTTTTT 612
||||||||| ||||||| |||||||||||| ||| ||| || | ||| | ||| |||||
Sbjct 820 ATTGTTTGCCTGCCCGGGATCCATGCAAATAAAGCAGATCTTAGAAGTCGCGCGGTTTTC 879
Query 613 AGATATGTACAAGGCGAACTAGATAAAGTTAGTGATCAACAGAGGATGTGCCTGCTTAGC 672
|||||||| | | ||||| | || || |||||||||||| || ||| |||||||| | |
Sbjct 880 AGATATGTGCTACGCGAATTCGAGGAACTTAGTGATCAACGGAAGATCTGCCTGCTGACC 939
Query 673 TTCGCTGTGTTCCCGGAGAATAAAGAGGTGAATAGAACAATGCTGATGTATTGGTGGATT 732
|||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 940 TTCGCTGTCTTCCCTGAAAATCAAGAGGTGAATAGAACGATGCTGATGTATTGGTGGATG 999
Query 733 GGGGAGGGCATTCTGAGTTCTCAAGACATACCATC-C--GA----A---AAG-GG-CATT 780
|||||||||||||||||| || |||||||| |||| | || | ||| || ||||
Sbjct 1000 GGGGAGGGCATTCTGAGTACTAAAGACATATCATCACAAGAGGGCACTGAAGAGGTCATT 1059
Query 781 CTCAAACCCGAAGATGTTGTGCAGGACATTCTTGATGG-TTTCACGGAGAAG-AACTTGA 838
||||||||||||||||||||| ||| ||||||| | || ||||||||| || |||||||
Sbjct 1060 CTCAAACCCGAAGATGTTGTGAAGGTCATTCTT-AAGGATTTCACGGA-TAGAAACTTGA 1117
Query 839 TTCAACCTGTTGAAAACAAACGCAAAATGGAGCCAAGTAGCTATAAGATGGCCCCTTTTG 898
|| |||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 1118 TTGAACCTGTTGAAATCAAACGCAAAGTCGAGCCAAGTAGCTATAAGATGGCCCCCTTTG 1177
Query 899 TGCATGCTTCAGTGGTTCTTATCTCCAAGGAGATAGGGCTTTTTGATATGTATGATGA-A 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1178 TGCATGCTTCAGTGGTTCTTATCTCCAAGGAGATAGGGCTTTTTGATATGTATGAT-ATA 1236
Query 958 AAGGAGAAGCCAACCATGAA-ACATTCAAGACTGAACAAGGTATGCCTAGTGGAAGGGTC 1016
||||| |||||| |||||| | || || || || ||||||||||||| |||||||||||
Sbjct 1237 AAGGACAAGCCAGTCATGAAGAAAT-CAGGAATGCACAAGGTATGCCTTGTGGAAGGGTC 1295
Query 1017 GTCAAGCCAGCCAGAAGCAAAAGCTaaaaaaaTGGACAG-TCCTC-ATC-TGATTGAAAC 1073
||||||||||| |||||||||||||||||||||||| || | | ||| | ||||||||
Sbjct 1296 GTCAAGCCAGCAAGAAGCAAAAGCTAAAAAAATGGA-AGATG-TAGATCAT-ATTGAAAC 1352
Query 1074 CGTGTTCAATGTTTCCGAGAGGTTCCCAGAATTT-ACACGCAGGTGGTTC 1122
|||||||||||||| |||||||| || || ||| ||| || |||||||
Sbjct 1353 TGTGTTCAATGTTTCGGAGAGGTTTCCGGA-TTTCACATTCAAGTGGTTC 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105019540140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5