BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356474
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37840.1 | Symbols: | Protein kinase superfamily protein | ... 472 4e-132
AT3G53930.2 | Symbols: | Protein kinase superfamily protein | ... 261 9e-69
> AT2G37840.1 | Symbols: | Protein kinase superfamily protein
| chr2:15851803-15856301 FORWARD LENGTH=2631
Length=2631
Score = 472 bits (255), Expect = 4e-132
Identities = 374/428 (87%), Gaps = 22/428 (5%)
Strand=Plus/Plus
Query 267 CCTGGACAGTCAGAACTCTGCTCCGAGCACTTCTCATGGGTCGCTGGATCTTGGGGATGC 326
||| ||||||||| | ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1612 CCTTGACAGTCAGTATTCTGCCCCGAGCACTTCTCATGGGTCTCTGGATCTTGGTGATGC 1671
Query 327 TTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCAGTTCTCTGA-AAAAGTGTGCAG 385
||||||||||||||||||| ||||| ||||||||||||| ||||||| |||| | |||||
Sbjct 1672 TTTTGAACAGCCATCAACTCACAGCCTGACAAGAATCAGGTCTCTGAGAAAA-TATGCAG 1730
Query 386 CAACAATTGCAGAATTAGTTCATGAAAGGATAAAATCTGACAAACACCTAGAAGCTTTCT 445
|||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 1731 CAACAATTGCAGAACTAGTTTATGAAAGGATTGAATCTGACAAACATCTAGAAGCTTTCT 1790
Query 446 CGATCCAACTGGCGATTCTGGCTATTTGGAAACAGGCACTGCACATATGCCATACTCAGG 505
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1791 CGATCCAATTGGCGATTCTGGCAATTTGGAAACAGGCACTGCACATATGTCATACTCAGG 1850
Query 506 CAATCTCAGGTTTGGAAGGAAGCCCAA-CTCAAGACATTAACAAACTAAGAGGAAGTAGC 564
|||| |||||||||||||||||||||| | ||||||||||||||||| | | ||||||||
Sbjct 1851 CAATTTCAGGTTTGGAAGGAAGCCCAAGC-CAAGACATTAACAAACT-A-A-GAAGTAGC 1906
Query 565 TGCCGGAAACACG--------AG--C--GT--A-TCACTGATATCAGCCATGATGGATTA 609
||| |||||||| || | | | |||||||| |||||||||||||||
Sbjct 1907 AGCCTGAAACACGATACTCACAGTTCTAATAAAGTCACTGATCTCAGCCATGATGGATCG 1966
Query 610 GAGGAGATATCCTCTCAGATTCAGAGGCAGTTTATCCGGGAGACTGAGGTTTCTGAAGAA 669
||||||||||||||||||||||||||||| ||||| | ||||| |||| || ||||||||
Sbjct 1967 GAGGAGATATCCTCTCAGATTCAGAGGCAATTTATACAGGAGATTGAGCTTGCTGAAGAA 2026
Query 670 CTTTCCAA 677
||| ||||
Sbjct 2027 CTTGCCAA 2034
Score = 335 bits (181), Expect = 5e-91
Identities = 216/233 (93%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 739 AATACAATGATGCCTGATGCTATGGAGACGCTATTTGAAGCAGCCCTCGATCTTGGAAAA 798
||||||| ||||| ||||| ||||||||| ||||||||||||| || ||||||||||||
Sbjct 2051 AATACAAAAATGCCAGATGCAATGGAGACGATATTTGAAGCAGCACTTGATCTTGGAAAA 2110
Query 799 CTTGGGGGAGTTAAGGAGGTTATGGGAGATATAGAGAACGCCGGAAACCAATATTCGAAA 858
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2111 CTTGGAGGAGTTAAGGAGGTTATGGGAGATACAGAGAACGCCGGAAACCAATATTCGAAA 2170
Query 859 GCGGTGCGTTTGCTGGTATTCCTTCTAGTAGAAGCACCAATGCTGATTCTGAATCCGCCA 918
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2171 GCAGTGCGTTTGCTGGTATTCCTTTTAGTAGAAGCACCAATGCTGATTCTGAATCCGCCA 2230
Query 919 TTGTCTCTCACAAACTCAGACAGGTATCG-CTCAGAACATATATCGATATCCT 970
|||||||||||||||||| ||||||||| ||||| |||||||| ||| ||||
Sbjct 2231 CTGTCTCTCACAAACTCAGTCAGGTATCGTCTCAGGACATATATTGATTTCCT 2283
Score = 246 bits (133), Expect = 3e-64
Identities = 153/163 (94%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 104 AGAATCTTCTTCTATCCACAGATGAAAATGATGCAGATCTGAAGATTGCTGATTTTGGAT 163
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGAATCTTCTTCTATCCACAAATGAAAATGATGCAGATCTGAAGATTGCTGATTTTGGAT 647
Query 164 TTGCAAGGTCGTCGCAACCTAGGGGGCTTGCAGAAACATTATTTGGTTCACCATTGTATA 223
||||||| |||| ||||||||||||||| ||||| || |||| |||||||||||||||||
Sbjct 648 TTGCAAGATCGTTGCAACCTAGGGGGCTCGCAGAGACTTTATGTGGTTCACCATTGTATA 707
Query 224 TGGCCCCAGAGATTATGCAACTTCACAAGTATGATGCAAAGGC 266
||||||||||||| |||||||| || |||||||||||||||||
Sbjct 708 TGGCCCCAGAGATCATGCAACTCCAGAAGTATGATGCAAAGGC 750
> AT3G53930.2 | Symbols: | Protein kinase superfamily protein
| chr3:19966352-19970813 FORWARD LENGTH=2561
Length=2561
Score = 261 bits (141), Expect = 9e-69
Identities = 238/284 (84%), Gaps = 10/284 (4%)
Strand=Plus/Plus
Query 269 TGGACAGTCAGAACTCTG-CT-CCGAGCACTTCTCATGGGTCGCTGGATCTTGGGGATGC 326
|||| |||||||| | || | ||| | ||||| |||||||| |||||||||| |||||
Sbjct 1640 TGGAGAGTCAGAA-T-TGTATCCCGGGTACTTCCCATGGGTCTCTGGATCTTGTAGATGC 1697
Query 327 TTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCAGTTCTCTGAAAAAGTGTGCAGC 386
||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||
Sbjct 1698 TTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCCGGTCTTTGCAAAAGTGTGCAGC 1757
Query 387 AACAATTGCAGAATTAGTTCATGAAAGGA-T-AAAATCTGACAAACACCTAGAAGCTTTC 444
|||| |||||||| |||||||||||| | ||||| | || || |||||||||||
Sbjct 1758 TGCAATAGCAGAATTGGTTCATGAAAGGGGTGAAAATG-GT-AAGCATTTAGAAGCTTTC 1815
Query 445 TCGATCCAACTGGCGATTCTGGCTATTTGGAAACAGGCACTGCACATATGCCATACTCAG 504
||||||||||||| |||||| || |||||||| || ||||| ||||| || |||||||||
Sbjct 1816 TCGATCCAACTGGTGATTCTTGCAATTTGGAATCAAGCACTACACATCTGTCATACTCAG 1875
Query 505 GCAATCTCAGGTTTGGAAGGAAGCCCAACTC-AAGACATTAACA 547
||| |||| ||| | |||||||||| ||| ||||||||||||
Sbjct 1876 GCAGTCTCGGGTATAGAAGGAAGCCTG-CTCCAAGACATTAACA 1918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5