BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356475
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3... 472 3e-132
> AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3411)
| chr2:15856632-15858920 FORWARD LENGTH=1531
Length=1531
Score = 472 bits (255), Expect = 3e-132
Identities = 323/355 (91%), Gaps = 7/355 (2%)
Strand=Plus/Plus
Query 286 GGTGGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAG---AAGACTATGAAGAA 342
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 472 GGTGGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGGTGAAGACTACGAAGAA 531
Query 343 AAAGAGTCTGGACC-ACTTTTGAAATTTGAAGAGGTCATGAGAG-AGACGGAAGCTCGTG 400
||||||| |||||| | | |||||||||||||||||||||| || |||| |||||| | |
Sbjct 532 AAAGAGTTTGGACCGA-TATTGAAATTTGAAGAGGTCATGA-AGGAGACTGAAGCTAGAG 589
Query 401 GAGCCACGCTTCCATCTGATATGTTAGAGGCTGCTAAGACCTTTGGGATACGCAAATTGC 460
|||| || ||||||||||||||||| || |||||||||| || |||||| |||||| |||
Sbjct 590 GAGCTACTCTTCCATCTGATATGTTGGAAGCTGCTAAGAACTATGGGATCCGCAAAGTGC 649
Query 461 TTCTCCTTAGGTACTTGGATTTGCAGAGCTCAGCTGGGCTGCTTGGCTTTGCTATAAGAT 520
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 650 TTCTCCTTAGGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGCTATAAGAT 709
Query 521 CATGGTCTATGCTTCGCAGCAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGA 580
||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CATGGGCTATGCTTCGTAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGG 769
Query 581 CTGAGATAGTGATTGATTCGTGTTGTGCCACTGTCGCTGAAGTTCAAAAGAGAGG 635
|||||||||| |||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 770 CTGAGATAGTCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGG 824
Score = 276 bits (149), Expect = 2e-73
Identities = 218/250 (87%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGGATGTGCAATGAATTTTCAGTTTTCAAGTGTTGTGAAAGTGAGAAACGAGATA 60
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 106 ATGGCAGGATGTGCAATGAATCTTCAGTTCTCAAGTGTTGTGAAAGTGAGAAACGAGATC 165
Query 61 TCTTCGGT-GAGGATTTACAATCGAGGCTTTGTGTTTAGAAATTTGGCTAAGGAAATGAA 119
||||| | | |||||| ||||||| |||||| |||||| |||| || |||| ||||||
Sbjct 166 TCTTCTTTTG-GGATTTGTAATCGAGACTTTGTATTTAGAGATTTAGCCAAGGCAATGAA 224
Query 120 GGTTCCTGTTTTGCGGATTA-AGGGTGCTTCAGGTAAGCAAAGGTCGAGGCTTTT-GATG 177
|| |||||||||||||||| ||| || |||||||| |||||||||||||||||| | ||
Sbjct 225 AGTGCCTGTTTTGCGGATTAGAGG-TGGTTCAGGTAGGCAAAGGTCGAGGCTTTTCG-TG 282
Query 178 GTTAATATGTCTCAGTCTCCCGTTGAGCCGCAATCTAGTG-TT--GCCGCTACTGAACAA 234
|||||||||||||| |||||| ||||||| |||||| ||| || || ||||||||||||
Sbjct 283 GTTAATATGTCTCAATCTCCCATTGAGCCACAATCTGGTGGTTTTGCGGCTACTGAACAA 342
Query 235 ATGAAAGGAG 244
|| |||||||
Sbjct 343 ATTAAAGGAG 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5