BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356484
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45300.1 | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353... 3094 0.0
> AT5G45300.1 | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353613-18356874
FORWARD LENGTH=2271
Length=2271
Score = 3094 bits (1675), Expect = 0.0
Identities = 1922/2043 (94%), Gaps = 9/2043 (0%)
Strand=Plus/Plus
Query 11 TCAACACCACCACCGGTTCGCAAGATCCGAATCTCGACCCGATTCCAGACCCGGGTCAAT 70
||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 46 TCACCACCACCACCGGTTCGCAAGATCCGAATCTCGACCCAATTCCAGACCCGGATCAAT 105
Query 71 TTCCCAACCGAAATCGCAACCTTCAACAATCTCGAAGGCCACGTGGCTTTGCCGCTGCGG 130
|||||||||| || ||||||| | ||||||||| | || || || || |||||||| |
Sbjct 106 TTCCCAACCGGAACCGCAACCAACCACAATCTCGCCGCCCTCGCGGATTCGCCGCTGCAG 165
Query 131 CTGCAGCAGCGTCAATAGCTCCAACGGAAAACGATGTAAACAACGGAAACATCGCCGGAA 190
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CAGCAGCAGCGTCGATAGCTCCAACGGAAAACGATGTAAACAACGGAAACATCGCCGGAA 225
Query 191 TCGGCGGTggagaaggaagcagcagcggaggaggaggaggaggagggaaagggaagagag 250
||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||
Sbjct 226 TCGGCGGTGGAGAAGGAAGCAGCGGCGGCGGAGGAGGTGGAGGAGGGAAAGGGAAGAGAG 285
Query 251 agagggaaaaggaaaaagagagaacgaagcttagagaaagaCATAGACGAGCAATCACAA 310
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 286 AGAGGGAGAAGGAAAAAGAGAGAACGAAGCTTAGAGAAAGACATAGACGAGCAATCACTA 345
Query 311 GTAGAATGCTCGCCGGATTAAGACAGTACGGTAACTTTCCGTTACCGGCGCGTGCTGATA 370
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 346 GTAGAATGCTCGCCGGATTAAGACAGTACGGTAATTTTCCGTTACCGGCGCGTGCTGATA 405
Query 371 TGAACGATGTAATCGCTGCTTTGGCTCGTGAAGCTGGGTGGAGTGTTGACGCTGACGGTA 430
|||| || ||||||||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct 406 TGAATGACGTAATCGCTGCTTTGGCTCGTGAAGCTGGTTGGAGTGTTGAAGCCGATGGTA 465
Query 431 CTACTTATCGGCAATCACATCAACCGAA-CAATGTGGTTCAGTTTCCGACGAGATCTATT 489
||||||||||||||||||| ||||| || | ||||||| |||||||||||||||||||||
Sbjct 466 CTACTTATCGGCAATCACAGCAACCAAATC-ATGTGGTACAGTTTCCGACGAGATCTATT 524
Query 490 GAGAGTCCACTTTCTTCTAGTACATTAAAGAACTGTGCTAAAGCTGCACTTGAATGTCAG 549
|||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||
Sbjct 525 GAGAGTCCACTTTCTTCTAGTACATTGAAGAACTGTGCTAAGGCTGCAATTGAATCTCAG 584
Query 550 CAGCATTCGGTTCTTA-GAATCGATGAGAATCTTTCTCCGGTGTCTCTTGATTCTGTTGT 608
|||||||| ||||||| ||| ||||||||| ||| |||| ||||||||||||||| |||
Sbjct 585 CAGCATTCAGTTCTTAGGAA-CGATGAGAAACTTGCTCCTGTGTCTCTTGATTCTATTGG 643
Query 609 TATCGCCGAGAGTGATCATCCCGGGAATGGAAGGTATACTGGTGCTAGTCCTATCGCCTC 668
||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 644 TATTGCCGAGAGTGATCATCCCGGGAATGGAAGGTATACTAGTGTTAGTCCTATCACCTC 703
Query 669 GGTTGGATGCTTGGAAGCCAATCAGCTTATACAAGATGTTCATTCCGCAGAGCAACGTAA 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 704 CGTTGGATGCTTGGAAGCCAATCAGCTTATACAAGATGTTCATTCCGCAGAGCAATGTAA 763
Query 729 TGACTTCACAGAGAGCTTTTATGTCCCTGTGTACGCCATGCTTCCAGTTGGCATTATAGA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGACTTCACAGAGAGCTTTTATGTCCCTGTGTACGCCATGCTTCCAGTTGGCATTATAGA 823
Query 789 CAGCTTTGGCCAGTTGGTTGATCCTGAAGGTGTAAGGCAAGAATTAAGTTACATGAAGTC 848
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 824 CAACTTTGGCCAGTTGGTTGATCCTGAAGGTGTAAGACAAGAATTAAGTTACATGAAGTC 883
Query 849 ATTAAATGTCGACGGAGTGGTAATAGATTGTTGGTGGGGAATAGTTGAAGGATGGAATCC 908
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 884 ATTAAATGTCGATGGAGTAGTAATAGATTGTTGGTGGGGAATAGTTGAAGGATGGAACCC 943
Query 909 TCAGAAATATGTATGGTCTGGCTATAGGGAGCTCTTTAACATTATCAGAGACTTCAAACT 968
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 944 TCAGAAATATGTATGGTCTGGCTATAGGGAGCTCTTTAACCTTATCAGAGACTTCAAACT 1003
Query 969 TAAACTACAGGTGGTGATGGCATTTCATGAATATGGAGGGAATGCATCTGGAAATGTTAT 1028
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1004 TAAGCTACAGGTGGTGATGGCATTTCATGAGTATGGAGGGAATGCATCTGGGAATGTGAT 1063
Query 1029 GATCTCGTTGCCCCAGTGGGTTTTGGAAG-TTGGAAAAGACAATCCAGACATATTTTTT- 1086
||| |||||||| |||||||| || |||| |||| ||||||||||||||||| ||||||
Sbjct 1064 GATTTCGTTGCCACAGTGGGTGTT-GAAGATTGGGAAAGACAATCCAGACAT-TTTTTTC 1121
Query 1087 ACTGATCGTGAAGGAAGAAGGAGTTTCGAGTGTTTGAATTGGAGCATTGACAAGGAACGG 1146
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ACTGATCGTGAAGGAAGAAGAAGTTTCGAGTGTTTGAATTGGAGCATTGACAAGGAACGG 1181
Query 1147 GTATTGCATGGACGAACTGGTATAGAGGTCTATTTTGATTTTATGAGAAGCTTCCGGTCA 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GTATTGCATGGACGAACTGGTATAGAGGTCTATTTTGATTTTATGAGAAGCTTCCGGTCA 1241
Query 1207 GAGTTTGATGACTTCTTTGTGGAAGGACTAATTGCTGCAGTTGAGATTGGTCTTGGAGCG 1266
|||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1242 GAGTTTGATGACTTGTTTGTGGAAGGACTAATTACTGCGGTTGAGATTGGTCTTGGAGCT 1301
Query 1267 GCTGGTGAACTGAAGTACCCATCTTTCCCAGAAAGGATGGGTTGGATTTATCCCGGTATT 1326
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TCTGGTGAACTAAAGTACCCATCTTTCCCAGAAAGGATGGGTTGGATTTATCCCGGTATC 1361
Query 1327 GGTGAGTTTCAGTGTTATGACAAATATTCGCAGTTAAATCTGCAAAAGGAAGCAAAATCA 1386
|||||||||||||||||||||||||||||||| || | |||||||||||||||||| |||
Sbjct 1362 GGTGAGTTTCAGTGTTATGACAAATATTCGCAATTGAGTCTGCAAAAGGAAGCAAAGTCA 1421
Query 1387 CGAGGATTCGCTTTCTGGGGTAAAGGACCAGAGAATGCTGGTCAATACAATTCTCAACCA 1446
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1422 CGAGGATTCACTTTCTGGGGTAAAGGACCAGAGAATGCTGGTCAATACAGTTCTCATCCA 1481
Query 1447 CATGAAACTGGGTTCTTCCAAGAAAGAGGTGAATATGACAGCTACTATGGCCGCTTCTTC 1506
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1482 CATGAAACTGTGTTCTTCCAAGAAAGAGGTGAATATGACAGCTATTATGGCCGCTTCTTC 1541
Query 1507 TTAAATTGGTATTCGCAATTGCTAATCGGTCATGCTGAGAATGTTCTGTCTCTTGCAAAT 1566
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1542 TTAAATTGGTACTCACAATTGCTAATTGGTCATGCTGAGAATGTTCTGTCTCTTGCAAAT 1601
Query 1567 CTCGCGTTTGAGGAGACAAAGATTATTGTCAAGATACCAGCGATTTACTGGTCTTACAAG 1626
||||| ||||||||||| |||||||||||||||||||| || || |||||||| ||||||
Sbjct 1602 CTCGCATTTGAGGAGACGAAGATTATTGTCAAGATACCGGCAATATACTGGTCATACAAG 1661
Query 1627 ACAGCTAGTCATGCTGCTGAATTAACTGCAGGATACTATAACCCTTCAAACCGTGATGGG 1686
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1662 ACAGCTAGTCATGCTGCTGAATTAACTGCAGGATACTACAACCCTTCAAACCGTGATGGG 1721
Query 1687 TACTCTCTTGTTTTCGAAACTTTGAAGAAGTATTCTGTGACTGCAAAGTTTGTGTGCCCT 1746
||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||
Sbjct 1722 TACTCTCTTGTTTTCGAAACTCTGAAGAAATATTCCGTGACTGTGAAGTTTGTGTGCCCT 1781
Query 1747 GGGCCACAAATGTCTCCGAATGCGCATGAAGAAGCATTAGCTGATCCAGAAGGTTTAAGT 1806
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 GGGCCACAAATGTCTCCCAATGCGCATGAAGAAGCATTAGCTGATCCAGAAGGTTTAAGT 1841
Query 1807 TGGCAGGTGATCAATGCAGCTTGGGATAAGGGACTTCTTATTGGAGGAGAGAATATGATT 1866
|||||||||||||| |||||||||||||||||||||| || || ||||||||| ||||
Sbjct 1842 TGGCAGGTGATCAACGCAGCTTGGGATAAGGGACTTCAAATCGGTGGAGAGAATGCGATT 1901
Query 1867 ACTTGCTTCGATAGAGAAGGTTGTATGAGATTAATCGATATAGCTAAACCGAGGAACCAT 1926
||||| ||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1902 ACTTGTTTCGACAGAGATGGTTGTATGAGATTAATCGATATAGCTAAACCAAGAAACCAT 1961
Query 1927 CCAGATAGCTATCACTTCTCCTTCTTCACATATCGTCAACCTTCTCCTCTGGTTCAAGGA 1986
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 CCAGATGGCTATCACTTCTCCTTCTTCACATATCGTCAACCTTCTCCTCTGGTTCAAGGA 2021
Query 1987 TCTACTTGCTTTCCAGATTTGGACTACTTCGTAAAACGCATGCACGGCGACATACAGAGA 2046
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||
Sbjct 2022 TCTACTTGCTTTCCAGATTTGGACTACTTCATTAAACGCATGCATGGCGACATA-AGAGA 2080
Query 2047 TAA 2049
|||
Sbjct 2081 TAA 2083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101555702535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5