BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg356493 Length=1491 Score E Sequences producing significant alignments: (Bits) Value AT5G45276.1 | Symbols: | unknown pseudogene | chr5:18338754-18... 1533 0.0 > AT5G45276.1 | Symbols: | unknown pseudogene | chr5:18338754-18340436 REVERSE LENGTH=1527 Length=1527 Score = 1533 bits (830), Expect = 0.0 Identities = 1032/1131 (91%), Gaps = 8/1131 (1%) Strand=Plus/Plus Query 365 AAAAGCAGATTGAGCAACAAACTA-ATGTAGTTGAAGC-AAAGGCGCGGGAGATTAAAGC 422 |||| || |||||| ||||||| | ||| | ||||||| ||| ||| ||||||||||| Sbjct 207 AAAACCATATTGAGAAACAAAC-AGATGCACTTGAAGCTAAA-AAGCGAGAGATTAAAGC 264 Query 423 AATAGAGATTGAAGCAGGTGGCAAAAGAAAGGAACTTGATTTGCTAAGGAACCAGATCAC 482 | ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| Sbjct 265 AGCAGAGATTGAAGCAGGTGACAAAAGAAAGTAACTTGATTTGCTAAGGAATCAGATCAA 324 Query 483 GGCAGAGGAAATGGCACTCATTGAGCTTAAGAAATTAGTGCAGAATACTCAAAGGGAACT 542 | ||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| Sbjct 325 GTCAGAGGAAACAACACTCATTGAGCTGAAGAAATCAGTGCAGAATACTCAAAGAGAACT 384 Query 543 TGAGTTGAAGAAGAAAGAGTTGAG-ACAGACGAGCAGTGTGTTTGTTAAGCACGAGCAGC 601 |||| ||||||||||||||||||| || |||||| ||||| ||||||||||||||||||| Sbjct 385 TGAGCTGAAGAAGAAAGAGTTGAGAAC-GACGAGTAGTGTATTTGTTAAGCACGAGCAGC 443 Query 602 AGCCTGTTGCAGCAGAGACTGAGCAGTTTAGTGGAGATCCTCTCATGCGTTATGAAATCT 661 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 444 AGCCTGTTGCAGCAGAGGCTGAGCAGTTTAGTGGAGATCATCTCATGCGTTATGAAATCT 503 Query 662 CATCAGTTTCTCTTGGTCACCATGAGGTTTCCAATGTTCTTAGAGCTAAACCTGATCCAG 721 |||||||| ||||||||||| ||| ||||||||||||||||||||||||| | ||||| Sbjct 504 CATCAGTTAATCTTGGTCACCTTGAAGTTTCCAATGTTCTTAGAGCTAAACGTAATCCAA 563 Query 722 GAAGATATGTTCTGAATCTAGTGGAGGGAGAAGTTAAGGATGCTCATCGCAAAAAAGAAT 781 || |||||||||||||| |||||||||||||| ||| ||||| |||||| |||||||||| Sbjct 564 GAGGATATGTTCTGAATTTAGTGGAGGGAGAAATTATGGATGTTCATCGAAAAAAAGAAT 623 Query 782 CTGGTTTACGGGAGTTACTGGTGGAGAATTTGGTTGTATTTATTGAAGAGCTAGCAGAAA 841 |||||||| ||||||||||| || ||||||||||| | ||| |||||||||||||||||| Sbjct 624 CTGGTTTAGGGGAGTTACTGCTGAAGAATTTGGTTCTGTTTTTTGAAGAGCTAGCAGAAA 683 Query 842 TTAAAGGATGGGACCAGGCTCAACTGCAGCTCAAGGCGACACAGGTGGCTACTATTTGGA 901 ||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |||||| Sbjct 684 TTAAAAGATGGGACCAGTCTCAACTGCAGCTCAAGGCGACACAGGTTGCTACTCTTTGGA 743 Query 902 AAAGGTTGATAAGCATCGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCTTTTTTGTTGT 961 |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 744 AAAGGTTGATAAACATTGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCGTTTTTGTTGT 803 Query 962 TCATTGTGGCATATGGATTAAAGAGTTTGATCAATGAAGAAGAGACTGCTCTACTTGTCA 1021 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 804 TCATTGTGGCATATGAATTAAAGAGTTTGATCAATGAAGAAAAGACTGCTCTACTTGTCA 863 Query 1022 CATCTGTTTCTCATTACAAACAGGGTCCAAAACTCTTTCATTCGCTTGGTCTTGAACTTA 1081 ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 864 CATCTGTTTCTAATTACAAACAGGGTCCAAAACTCTTTCATTCCCTTGGTCTTAAACTAA 923 Query 1082 AGATCCCAGATTATGTGCTAGGTCTCATAAACAACCGCCATTATATTCCTGCAGTACGAC 1141 ||||||| |||||||| |||| |||||||||||||| |||||||| ||||||| |||| Sbjct 924 AGATCCCCGATTATGTTATAGGCCTCATAAACAACCGTCATTATATACCTGCAGCCCGAC 983 Query 1142 TTGTATGTTTGTTCAAGCTTACAGACTTC-CAACCCCAAACTCTCTTAATGAAAGAGGTC 1200 |||||| ||||||| | |||| ||||||| | | |||||| |||||||||||||| |||| Sbjct 984 TTGTATCTTTGTTCGACCTTAAAGACTTCTC-AGCCCAAAATCTCTTAATGAAAGCGGTC 1042 Query 1201 ATCGATTTAAAACGCTCTGCCCTGGAAAAAGCTGAGAACAAAGACGTTGGAAGATTGAGA 1260 |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 1043 ATCGATTTAAAACGCTCTGCGCTGGAAAAAGCTGATAACAAAGATGTTGGAAGATTGAAA 1102 Query 1261 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATCTTCCAGCGGACCTTATT 1320 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1103 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATATTTCAGCGGACCTTATT 1162 Query 1321 GCCAAACTCATGTTTCATAAAGAAAACTCAACACCACCTGTGCTTCATTGCGCTGTTGAA 1380 ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 1163 GCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCATTGCTCTGTTGAA 1222 Query 1381 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGTCTTCAGGTTCCT 1440 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1223 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGACTTCAGGTTCCT 1282 Query 1441 AAGCGCGAGACTGAACCCTTCGTGATCCCATTAAAAAATGGTAGGTTTTAA 1491 || || |||||| || ||||||||| ||||| || |||||||||||| ||| Sbjct 1283 AAACGAGAGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGGTTCTAA 1333 Score = 305 bits (165), Expect = 6e-82 Identities = 197/213 (92%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 117 GATATTGAGGAGTTTACAGGAACATCTTGATACACTTGAAACCGATATCGAAAAGAAGTC 176 ||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1 GATATTGAGGAGTGTACAGGACCATCTTGATATGCTTGAAACCGATATCGAAAAGAAGTC 60 Query 177 TCTGGAAGTTGAAACAAAGGAAAACAAGCTTCAAGGTCTGACCTTGAAATTGGGGAAAAT 236 || |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| | Sbjct 61 TCGGGAAGTTGAAACCAAGGAGAACAAGCTTCAAGTTCTGAGCTTGAAATTGGGGAAAGT 120 Query 237 CCAAAAGCAGATTAAAGTTGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTTGATTT 296 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 121 CCAGAAGCAGATTAAAGCAGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTAAATTT 180 Query 297 GCTAAAGAATCAGATCAAGTCAGAGGAAAACCA 329 ||||| ||||||||||||||||||||||||||| Sbjct 181 GCTAAGGAATCAGATCAAGTCAGAGGAAAACCA 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73543798425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5