BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356493
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45276.1 | Symbols: | unknown pseudogene | chr5:18338754-18... 1533 0.0
> AT5G45276.1 | Symbols: | unknown pseudogene | chr5:18338754-18340436
REVERSE LENGTH=1527
Length=1527
Score = 1533 bits (830), Expect = 0.0
Identities = 1032/1131 (91%), Gaps = 8/1131 (1%)
Strand=Plus/Plus
Query 365 AAAAGCAGATTGAGCAACAAACTA-ATGTAGTTGAAGC-AAAGGCGCGGGAGATTAAAGC 422
|||| || |||||| ||||||| | ||| | ||||||| ||| ||| |||||||||||
Sbjct 207 AAAACCATATTGAGAAACAAAC-AGATGCACTTGAAGCTAAA-AAGCGAGAGATTAAAGC 264
Query 423 AATAGAGATTGAAGCAGGTGGCAAAAGAAAGGAACTTGATTTGCTAAGGAACCAGATCAC 482
| ||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||
Sbjct 265 AGCAGAGATTGAAGCAGGTGACAAAAGAAAGTAACTTGATTTGCTAAGGAATCAGATCAA 324
Query 483 GGCAGAGGAAATGGCACTCATTGAGCTTAAGAAATTAGTGCAGAATACTCAAAGGGAACT 542
| ||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 325 GTCAGAGGAAACAACACTCATTGAGCTGAAGAAATCAGTGCAGAATACTCAAAGAGAACT 384
Query 543 TGAGTTGAAGAAGAAAGAGTTGAG-ACAGACGAGCAGTGTGTTTGTTAAGCACGAGCAGC 601
|||| ||||||||||||||||||| || |||||| ||||| |||||||||||||||||||
Sbjct 385 TGAGCTGAAGAAGAAAGAGTTGAGAAC-GACGAGTAGTGTATTTGTTAAGCACGAGCAGC 443
Query 602 AGCCTGTTGCAGCAGAGACTGAGCAGTTTAGTGGAGATCCTCTCATGCGTTATGAAATCT 661
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 444 AGCCTGTTGCAGCAGAGGCTGAGCAGTTTAGTGGAGATCATCTCATGCGTTATGAAATCT 503
Query 662 CATCAGTTTCTCTTGGTCACCATGAGGTTTCCAATGTTCTTAGAGCTAAACCTGATCCAG 721
|||||||| ||||||||||| ||| ||||||||||||||||||||||||| | |||||
Sbjct 504 CATCAGTTAATCTTGGTCACCTTGAAGTTTCCAATGTTCTTAGAGCTAAACGTAATCCAA 563
Query 722 GAAGATATGTTCTGAATCTAGTGGAGGGAGAAGTTAAGGATGCTCATCGCAAAAAAGAAT 781
|| |||||||||||||| |||||||||||||| ||| ||||| |||||| ||||||||||
Sbjct 564 GAGGATATGTTCTGAATTTAGTGGAGGGAGAAATTATGGATGTTCATCGAAAAAAAGAAT 623
Query 782 CTGGTTTACGGGAGTTACTGGTGGAGAATTTGGTTGTATTTATTGAAGAGCTAGCAGAAA 841
|||||||| ||||||||||| || ||||||||||| | ||| ||||||||||||||||||
Sbjct 624 CTGGTTTAGGGGAGTTACTGCTGAAGAATTTGGTTCTGTTTTTTGAAGAGCTAGCAGAAA 683
Query 842 TTAAAGGATGGGACCAGGCTCAACTGCAGCTCAAGGCGACACAGGTGGCTACTATTTGGA 901
||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 684 TTAAAAGATGGGACCAGTCTCAACTGCAGCTCAAGGCGACACAGGTTGCTACTCTTTGGA 743
Query 902 AAAGGTTGATAAGCATCGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCTTTTTTGTTGT 961
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 744 AAAGGTTGATAAACATTGAAGCTCCAAGATCATCTCTCGAGGCTTTGGCGTTTTTGTTGT 803
Query 962 TCATTGTGGCATATGGATTAAAGAGTTTGATCAATGAAGAAGAGACTGCTCTACTTGTCA 1021
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 804 TCATTGTGGCATATGAATTAAAGAGTTTGATCAATGAAGAAAAGACTGCTCTACTTGTCA 863
Query 1022 CATCTGTTTCTCATTACAAACAGGGTCCAAAACTCTTTCATTCGCTTGGTCTTGAACTTA 1081
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 864 CATCTGTTTCTAATTACAAACAGGGTCCAAAACTCTTTCATTCCCTTGGTCTTAAACTAA 923
Query 1082 AGATCCCAGATTATGTGCTAGGTCTCATAAACAACCGCCATTATATTCCTGCAGTACGAC 1141
||||||| |||||||| |||| |||||||||||||| |||||||| ||||||| ||||
Sbjct 924 AGATCCCCGATTATGTTATAGGCCTCATAAACAACCGTCATTATATACCTGCAGCCCGAC 983
Query 1142 TTGTATGTTTGTTCAAGCTTACAGACTTC-CAACCCCAAACTCTCTTAATGAAAGAGGTC 1200
|||||| ||||||| | |||| ||||||| | | |||||| |||||||||||||| ||||
Sbjct 984 TTGTATCTTTGTTCGACCTTAAAGACTTCTC-AGCCCAAAATCTCTTAATGAAAGCGGTC 1042
Query 1201 ATCGATTTAAAACGCTCTGCCCTGGAAAAAGCTGAGAACAAAGACGTTGGAAGATTGAGA 1260
|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct 1043 ATCGATTTAAAACGCTCTGCGCTGGAAAAAGCTGATAACAAAGATGTTGGAAGATTGAAA 1102
Query 1261 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATCTTCCAGCGGACCTTATT 1320
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1103 GCCATCGTTGAACTTGCAGCAGATTATAAGCTTGACATTGATATTTCAGCGGACCTTATT 1162
Query 1321 GCCAAACTCATGTTTCATAAAGAAAACTCAACACCACCTGTGCTTCATTGCGCTGTTGAA 1380
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 1163 GCCAAACTCATGTTTCATAAAGAAAACCCAACACCACCTGAGCTTCATTGCTCTGTTGAA 1222
Query 1381 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGTCTTCAGGTTCCT 1440
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1223 GCACCAAGCCCATCAGCAAATGGTGGGTCTTCAGGTTCAAGGGTGGGACTTCAGGTTCCT 1282
Query 1441 AAGCGCGAGACTGAACCCTTCGTGATCCCATTAAAAAATGGTAGGTTTTAA 1491
|| || |||||| || ||||||||| ||||| || |||||||||||| |||
Sbjct 1283 AAACGAGAGACTAAAGCCTTCGTGAACCCATCAACAAATGGTAGGTTCTAA 1333
Score = 305 bits (165), Expect = 6e-82
Identities = 197/213 (92%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 117 GATATTGAGGAGTTTACAGGAACATCTTGATACACTTGAAACCGATATCGAAAAGAAGTC 176
||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1 GATATTGAGGAGTGTACAGGACCATCTTGATATGCTTGAAACCGATATCGAAAAGAAGTC 60
Query 177 TCTGGAAGTTGAAACAAAGGAAAACAAGCTTCAAGGTCTGACCTTGAAATTGGGGAAAAT 236
|| |||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||| |
Sbjct 61 TCGGGAAGTTGAAACCAAGGAGAACAAGCTTCAAGTTCTGAGCTTGAAATTGGGGAAAGT 120
Query 237 CCAAAAGCAGATTAAAGTTGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTTGATTT 296
||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CCAGAAGCAGATTAAAGCAGCAGAGATTGAGTCAGGTGACAAAGAAAAGGAACTAAATTT 180
Query 297 GCTAAAGAATCAGATCAAGTCAGAGGAAAACCA 329
||||| |||||||||||||||||||||||||||
Sbjct 181 GCTAAGGAATCAGATCAAGTCAGAGGAAAACCA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5