BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356517
Length=2976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 944 0.0
> AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18302147-18308303 REVERSE LENGTH=3696
Length=3696
Score = 944 bits (511), Expect = 0.0
Identities = 1731/2288 (76%), Gaps = 211/2288 (9%)
Strand=Plus/Plus
Query 157 ACTGAACCAGGA-GAACAACGTCTGAAGCAATTGGGAGAGAAA-TTGGATGTCGAGTGCA 214
||||||||| || || ||||| || |||||| | | || ||| ||| |||| |||||||
Sbjct 643 ACTGAACCA-GAGGATCAACGCCTTAAGCAACTAGCAG-TAAAGTTGAATGTGGAGTGCA 700
Query 215 ATGACAACGAAACTCGTATTGTTGCAGTCGTCGGGATGGGTGGAATCGGCAAAACCTTTC 274
|||||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||
Sbjct 701 ATGACAACGAAACTCGTATTGTTGAAGTCGTAGGGATGCCCGGAATCGGCAAAACCTATC 760
Query 275 TCGCCAAGAAATTGTTAGAAAAGCTGAAGAGGAAGATTGGCAGTCAC-GTGT-TT-ATCG 331
||||||||||| | || | ||||| |||| |||||| || || |||| || ||||
Sbjct 761 TCGCCAAGAAACTCTTCGCCAAGCTTAAGAAGAAGAT---CAACCATTGTGTGTTCATCG 817
Query 332 AGTCCGTGCGTGAAACT-TC-GAAG-GCACATGGATTCGATAAGCTGAAACTGCAAAAGA 388
||| | |||||| | | || | | ||| | |||| | | | | || || || ||||
Sbjct 818 AGTTCAAGCGTGAGA-TGTCAGCGGAGCA-A-GGAT-C-AGA-G-TGG--CTACAGAAGA 868
Query 389 CACTCGTGGATGGTTTGCTCCCGA-ATG-AAGATATA-ATTTGTGATAATGAGAATCCAC 445
||| ||||| |||||||| || || ||||| | | | ||| | ||| |||
Sbjct 869 GACTTGTGGAAGGTTTGCTG--GATATTCAAGAT-TGCACC-G--ATAC--A-AATGCAC 919
Query 446 TCGAGGTTTGGAAGGATCATCTTCTTA-AGAAGAAAGTTGCGGTTGTTCTT-GATGACGT 503
| ||||||||||||||| | ||| | | |||||||| | | ||||| || ||||| ||
Sbjct 920 TTGAGGTTTGGAAGGAT-AGCTTAATCGACAAGAAAGTCGTGATTGTT-TTCGATGATGT 977
Query 504 GCA-TGGCAAGGAACAAGTAAATGCG--CTTCT-A-GGGAAT-TGTGATTGGATTAAGAA 557
| | || ||| |||| | | || || | || | ||| || || || |||||||||||
Sbjct 978 G-AGTGACAAAAAACA-G-ATATCCGAACCACTTAAGGGTATCTGCGACTGGATTAAGAA 1034
Query 558 GGGGAGCAGGATCATCATCACTACCCGCGACAAGTCATTG-CTCAAAGGGGTGGAAATGG 616
|||||||| |||| ||||||| || || |||||||||||| || | ||| | | |
Sbjct 1035 GGGGAGCATGATCGTCATCACGACACGGGACAAGTCATTGACTGA--GGGATT-A---G- 1087
Query 617 TCAGC-GATATCTATGAAGTCCCCGGGTTTAATGACAGTGATAGCTTAGAGCTCTTTAGC 675
||| | ||| | ||||||||||| ||||| ||||| || || ||||||||||||||||
Sbjct 1088 TCA-CTGATCTTTATGAAGTCCCTGGGTTGAATGAGAGAGACGGCTTAGAGCTCTTTAGG 1146
Query 676 ACTTACGCCT-TTGATGATAAATCATGTAAGTT-CATGGAGTTGTCTAGAAAGTTTGTGG 733
|| | | || ||| | ||| | | | || || ||||||| | ||||||||||||||||
Sbjct 1147 GCTCAAGTCTGTTG-TAATAT-TGAAGGAAATTTCATGGAGCTATCTAGAAAGTTTGTGG 1204
Query 734 ATTA--CACTGGAGGAAATCCATTAGCACTCAAGGCATTGGG-AGAGGAACTTCTTGGGA 790
||| ||| | ||| || || ||||| ||| ||| ||| || | |||| |||| ||||
Sbjct 1205 ATTTTGCAC-G-AGGCAACCCCTTAGCTCTCGAGGAATTCGGTA-AGGAGCTTCGCGGGA 1261
Query 791 AAGACAAGGGTCATTGGGAAGCAAGACTTGTAACACTTACACAACGTTCCAA-CGAGAAG 849
||||| ||| ||| |||||| ||||||||| ||||| |||| | |||||| | | | |
Sbjct 1262 AAGACGAGGCTCACTGGGAAACAAGACTTGGGACACTGGCACAGCATTCCAATCCA-ACG 1320
Query 850 ATCAGAAAGGAGTTGATACTCAGCT-ATGATGAACTGAATGAGCATCAGAAGGATGTTTT 908
|||||| || || | | | | || |||||||||| || ||||| |||||||||| ||
Sbjct 1321 ATCAGAGAGAAGCTAAGAAGCT-CTTATGATGAACTAAACGAGCAGCAGAAGGATGCGTT 1379
Query 909 TCTCGATATCGCATGTTTCTTTAGATCACAAGATGAGAACTACATTAAAACTTTACTTCA 968
||| ||||| || | ||||||||| ||||||||||||| |||| ||| || ||||||| |
Sbjct 1380 TCTTGATATAGCTTATTTCTTTAGGTCACAAGATGAGAGCTACGTTAGAAGTTTACTTGA 1439
Query 969 CTGCAGTTTTGACGCTGAATCTG-GAGAAGCCGGG-AAGGAAGTTAGAGAACTCAGT-GA 1025
| | || |||| ||||||| | | ||| | || ||| || ||||||| ||| | ||
Sbjct 1440 TT-C--TTATGACCCTGAATCCGCG-GAATCTGGTCAAG-AATTTAGAGACCTC-GCAGA 1493
Query 1026 CAAGTTCTTGATTCGTATCTCTGAAGATAGAGTAGAGATGAATGATCTAATCTATACATT 1085
||| ||||||||| | | | ||| | | |||| |||||| |||||||| | | |||| |
Sbjct 1494 CAAATTCTTGATTGGCGTGTGTGATGGTCGAGTTGAGATGCATGATCTATTATTTACAAT 1553
Query 1086 GGG-AAGAGAACTTGCAATATCATGTGTTGAAACTA-TAGCAGGGAAAT-ATAGGTTGTT 1142
|| ||| || | | | | || | ||| ||| | |||| ||||| | || |||||
Sbjct 1554 GGCCAAG-GA----G-A-T-T---GT-T-GAAGCTACT-GCAGAGAAATCA-AGATTGTT 1598
Query 1143 GCCGTCGAATCGTGAAGAGTTTAT---TAA----T-G-CACT-GAAGAACAAAGAGGAAA 1192
|| ||||| | ||| |||||| | ||| | | | || || |||| | ||||
Sbjct 1599 GCTGTCGAGTTGTGCAGAGTTGAAAAATAAAGAGTTGTCTCTTGATCAACA--G-GGAA- 1654
Query 1193 GAGACAAGATAAGAGGTATT-TTCCTAGACATGTCTAAAATGGAGGAAATA-CCCTTAGA 1250
|||||||| | ||||| ||| || ||||||||||| |||||||||||| | |||||| |
Sbjct 1655 GAGACAAGGTTAGAGGAATTGTTT-TAGACATGTCTGAAATGGAGGAAA-AGCCCTTA-A 1711
Query 1251 CTACAAAGC-GTTTGT-T-GGTATGAGCAATCTGCGGTACCTAAAAGTCTACAATTCTCA 1307
| | ||| |||| | | |||||||||| ||| |||||||| |||||||||| |||||
Sbjct 1712 --AGAGAGCAGTTTTTGTCGGTATGAGCAGTCTACGGTACCTGAAAGTCTACAGTTCTCT 1769
Query 1308 TTGTCCT-CGACAATGCGAAG-CTGACAGTAAATTAAACCTACCCGATGGTCTTGAGTTC 1365
||||||| | || | | || |||| | || ||| || |||| ||||| ||||| ||
Sbjct 1770 TTGTCCTACT-CACT-CTAAAACTGAGTGCAAGTTACACTTACCTGATGGACTTGAATTT 1827
Query 1366 CCTATATG-TAATGTT--C-GATAT-TTCCACTGGCTGAAATTTCCAGTGGAG-GAACTT 1419
|| | | | |||| || | ||| | ||| ||||| |||||||||||| ||| ||||||
Sbjct 1828 CCAAAA-GATAATATTGTCCGATGTCTTC-ACTGGGTGAAATTTCCAG-GGACAGAACTT 1884
Query 1420 CCTTGTGACTTGGACCCCAAGAATCTTATCGATCTTAAGTTGCATTACAGCCAGATTAGA 1479
|| ||||| ||||||| ||||| |||||||||| ||| | ||||||| | ||||
Sbjct 1885 CCACCAGACTTTTACCCCAATAATCTCATCGATCTTAGGTTACCTTACAGCAATATTAC- 1943
Query 1480 CAAGTCT--GGA-CTAGTGA-TAAGGCTACACC-AAGACTGAAGTGGGTTGATCTCAGTC 1534
|| ||| ||| || || | ||||| | |||| || |||||||||||||||||||| |
Sbjct 1944 CAC-TCTATGGAGCT-GT-ACTAAGGTTGCACCTAAT-CTGAAGTGGGTTGATCTCAGCC 1999
Query 1535 ATTCGAGTAAGTTGAGTTCCTTGTTGGGTTTATCAAAAGCACCAAATCTTTTGAGATTAA 1594
| |||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2000 ACTCGAGTAACTTGAATTCCTTGATGGGTTTATCAGAAGCACCAAATCTTTTGAGATTAA 2059
Query 1595 ACCTCGAAGGCTGCACGAGTTTGGAGGAGTTATCCGGA-GAGATATTACAAAACATGAAG 1653
| || ||||||||||| ||||| |||||||| || || ||||| | || | |||| |
Sbjct 2060 ATCTTGAAGGCTGCACAAGTTTAAAGGAGTTA-CCTGATGAGATG--A-AAGATATGACG 2115
Query 1654 AATCTCATTCTCTTGAATCT-AAGAGGATGCACAGGTCT-TGTGTCTCTGCCAAAGATCA 1711
||||| || || |||| || ||||||||||||| | || | ||||||| ||||||||||
Sbjct 2116 AATCTTGTTTTCCTGAA-CTTAAGAGGATGCACAAGCCTCT-TGTCTCTACCAAAGATCA 2173
Query 1712 GT-CTATGTTCCTTGAAGATTCTCATCCTCAGTGGCTGCTCGAAG-TTTCAGA-AGTTTC 1768
| | | ||||||||||| |||||| || || |||||||| ||| ||||||| | |||
Sbjct 2174 CTACGAA-TTCCTTGAAGACTCTCATTCTTAGCGGCTGCTC-AAGCTTTCAGACA-TTTG 2230
Query 1769 AGGTGATTTCAGAAAATCTAGAAACTTTATACTTAAATGGCACTGCA-ATAGATAGG-CT 1826
|||||||||||||| ||||||| || |||||||||| ||||| | | ||| || || ||
Sbjct 2231 AGGTGATTTCAGAACATCTAGAGTCTCTATACTTAAACGGCACAG-AGATAAAT-GGACT 2288
Query 1827 TCCTCCATC-AGTTGGTAATCTCCAGAGACTTATCTTATTGGATTTGAAAGACTGCAAAA 1885
||||||| | | ||||||||||||| ||||||||||| || |||||||||| |||||||
Sbjct 2289 TCCTCCAGCCA-TTGGTAATCTCCATAGACTTATCTTTTTAAATTTGAAAGATTGCAAAA 2347
Query 1886 ATCTAGAGACTCTTTCTGATTGTACAAATCTTGGGAA-TATGAGATCTCTTCAAGAACTC 1944
|||||| ||||||| |||||||| | | | |||| | | | ||||||||||||||||
Sbjct 2348 ATCTAGCGACTCTTCCTGATTGT-C---T-TGGGGAGCT-TAA-ATCTCTTCAAGAACTC 2400
Query 1945 AAACTTTCTGGTTGTTCAAAGCTCAAGAGTTTTCCC--A----A-G---AACATAGAAAA 1994
||||| ||| | || ||||||||||| | ||||||| | | | || || ||||
Sbjct 2401 AAACTCTCTCGCTGCTCAAAGCTCAAAA-TTTTCCCCGATGTTACGGCGAAAATGGAAAG 2459
Query 1995 CTTGC-GGAATTTGCTACTCGAAGGAACAGCAATAACAAAGATGCCA--CAAAATATTA- 2050
|||| || ||| || ||||| || ||| ||||| || || ||||| || || ||
Sbjct 2460 TTTGCTGGT-TTTACTGCTCGATGGGACATCAATAGCAGAGTTGCCATGCAGCATTTTTC 2518
Query 2051 ACGGTATGTCTT-TACTGCGACGTTTATGCTTAAGCAGGAGTGACGAA-ATCTACACCCT 2108
|| ||| ||| | ||||||||| ||||||||||||||| ||| || ||| ||||||
Sbjct 2519 ACT-TAT--CTTCT-CTGCGACGTCTATGCTTAAGCAGGAATGAT-AATATCCGCACCCT 2573
Query 2109 GC-AGTTTAACACCAA-CGA-ACTGTACCATTTGAAATGGCTCGAGTTAATGTATTGTAA 2165
| | ||| ||| | | | ||| |||| |||| ||||| ||||||| |||||||||
Sbjct 2574 TCGA-TTTGACATGGGTC-ACA-TGTTCCATCTGAAGTGGCTTGAGTTAAAGTATTGTAA 2630
Query 2166 GAATCTCACATCTCTTTTGGGGCTTCCACCAAATCTTCAATTCTTATATGCTCATGGTTG 2225
|||||||||||||||| ||||||||||||||||| | |||| |||| ||||| ||
Sbjct 2631 GAATCTCACATCTCTTCCCATACTTCCACCAAATCTTCAGTGCTTAAATGCACATGGCTG 2690
Query 2226 TACCTCACTGAA-AACTGT-GTCAAGTCCACTAGCC-TTGCTTATCTC-AACGGAGCAGA 2281
||| ||||| || ||| || | || | || | | || || || | | | ||| |||||||
Sbjct 2691 TACTTCACT-AAGAACAGTCGCCA-GCCCGCAAACCCTTCCT-A-CACCAACAGAGCAGA 2746
Query 2282 TTCATTCTACGTTTATTTTCACCAACTGCCATGAACTGGAACAAGTCTCAAAGAATGATA 2341
||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||||| ||
Sbjct 2747 TTCATTCCACCTTTATTTTCACTAACTGTCACGAACTAGAACAAGTCTCAAAGAATGCTA 2806
Query 2342 TCATGTCT 2349
|||| |||
Sbjct 2807 TCATTTCT 2814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147942314907
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5