BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356527

Length=2625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45190.2 | Symbols:  | Cyclin family protein | chr5:18277620...   207    3e-52
  AT1G30790.1 | Symbols:  | F-box and associated interaction doma...  65.8    2e-09


> AT5G45190.2 | Symbols:  | Cyclin family protein | chr5:18277620-18281874 
REVERSE LENGTH=2150
Length=2150

 Score =  207 bits (112),  Expect = 3e-52
 Identities = 204/245 (83%), Gaps = 19/245 (8%)
 Strand=Plus/Plus

Query  1337  CCTCTATCGTTTTCTCGCGACTCTCTAGGGTTAGGGTTTGTTTAATTTCACGCATTAttc  1396
             ||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct  45    CCTCTTTCGTTTTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGATTTTCACGCGTTATTC  104

Query  1397  ttcttcttcttcttctGCAATTCGCGACTGGAGAAGTACCTATTTTCATCGCAGGTT---  1453
             ||| |||||||||   ||||||||| ||| ||||||  | || || ||| | || ||   
Sbjct  105   TTCATCTTCTTCT---GCAATTCGCAACTAGAGAAG--C-TAATTCCATTGAAG-TTAAG  157

Query  1454  -TGG--ATA-TTTTCG-TTCTAGAATATACTCTAATGGCTGGAGTTCTAGCTGGAGAATG  1508
              |||  ||| |||| | || ||||| |||||  |||||||||||| |||||||| |||||
Sbjct  158   GTGGGGATAATTTTTGGTTTTAGAAGATACT--AATGGCTGGAGTACTAGCTGGGGAATG  215

Query  1509  TTCGTACAGTGAGATTGGAGTTTCATCACTCTCCAGGAATTCTCATGTAAAGCAAGACA-  1567
             ||| |||||||||| |||||||||||||| ||| |||||||| |||| ||||||||| | 
Sbjct  216   TTCTTACAGTGAGAGTGGAGTTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGA-AG  274

Query  1568  AGGTT  1572
             |||||
Sbjct  275   AGGTT  279


> AT1G30790.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:10932713-10934066 FORWARD LENGTH=1354
Length=1354

 Score = 65.8 bits (35),  Expect = 2e-09
 Identities = 35/35 (100%), Gaps = 0/35 (0%)
 Strand=Plus/Plus

Query  1831  TTCACGATATGTAACCCTAGCACTAGACAAGTCAT  1865
             |||||||||||||||||||||||||||||||||||
Sbjct  382   TTCACGATATGTAACCCTAGCACTAGACAAGTCAT  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 130333717914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5