BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356549
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45020.1 | Symbols: | Glutathione S-transferase family prot... 680 0.0
> AT5G45020.1 | Symbols: | Glutathione S-transferase family protein
| chr5:18168682-18170651 FORWARD LENGTH=1262
Length=1262
Score = 680 bits (368), Expect = 0.0
Identities = 411/432 (95%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 14 TTTTCAACGGGATAAACAATGGTGTTTATAAATGTGGATTTGCTAGGAAACAAGAACCCT 73
|||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 669 TTTTCAACGGAATAAACAACGGTGTTTATAAATGTGGGTTTGCAAGGAAACAAGAACCCT 728
Query 74 ACAATGAGGCAGTGAACCAGTTATATGAAGCAGTAGATAGATGTGAGGAAATACTCGGAA 133
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 729 ATAATGAGGCAGTGAACCAGTTATATGAAGCAGTAGATAGATGTGAGGAAGTACTCGGAA 788
Query 134 AACAACGATACATCTGTGGAAACACTTTCACTGAAGCAGATATCCGATTATTCGTCACTC 193
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AACAACGATACATCTGCGGAAACACTTTCACTGAAGCAGATATCCGATTATTCGTCACTC 848
Query 194 TCATAAGATTTGATGAGGTTTACT-CGGTTCACTTCAAATGCAACAAGAGACTCTTACGG 252
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 849 TCATAAGATTTGATGAGGTTTA-TGCAGTTCACTTCAAATGCAACAAGAGACTCTTACGG 907
Query 253 GAATACCCGAATATCTTCAACTACATAAAAGATATCTACCAAATCCAGGGCATGAGTAGC 312
|| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 908 GAGTACCCGAATATCTTCAACTACATAAAAGACATTTACCAAATACACGGCATGAGTAGC 967
Query 313 ACTGTGAACATGGAACACATTAAGCAACATTACTACGGGAGCCACCCTACGATAAACCCA 372
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 968 ACCGTAAACATGGAACACATTAAGCAACATTACTACGGAAGCCACCCTACGATAAACCCA 1027
Query 373 TTCGGGATCATCCCTCACGGCCCCAATATCGATTACTCTTCGCTTCATGACCGCGACAGA 432
|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 1028 TTCGGGATCATCCCTCACGGCCCCAATATCGACTACTCTTCGCCTCATGATCGCGACAGA 1087
Query 433 TTCTCCTCGTGA 444
||||||||||||
Sbjct 1088 TTCTCCTCGTGA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5