BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356572

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45000.1 | Symbols:  | Disease resistance protein (TIR-NBS-L...   654    0.0  
  AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-2...   185    4e-46


> AT5G45000.1 | Symbols:  | Disease resistance protein (TIR-NBS-LRR 
class) family | chr5:18165383-18167193 FORWARD LENGTH=1492
Length=1492

 Score =  654 bits (354),  Expect = 0.0
 Identities = 444/487 (91%), Gaps = 8/487 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGGTTTCCTCCTTCT-CCGACGAAGAAATCCCGCCGCAGCACCAAGTGTTCATCAA  59
            ||||||||| ||||| ||| | |  ||||||||||| |||||||||||||| ||||||||
Sbjct  45   ATGGCGGTTCCCTCCATCTACAG-TGAAGAAATCCCACCGCAGCACCAAGTCTTCATCAA  103

Query  60   CTACAGAGGAGACGAGCTACGAAAAAGCTTCCTCGGGTTTCTCG-TGAAGGCCATGAGAG  118
            || ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  104  CTTCAGAGGAGAGGAGCTACGAAAAAGCTTCCTCGGGTTTCT-GTTGAAGGCCATGAGAG  162

Query  119  ACGCGAACATCAACGTCTTCACAGATGAGATCGAAGTCAAAGGTAAAGATTTACAGAATC  178
            ||||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||
Sbjct  163  ACGCGAAGATCAACGTCTTTACAGATGAGATCGAAGTCAGAGGTAGAGATATACAGAATC  222

Query  179  TTTTCAGTAGGATCGAGGAATCAAGAGTCGCGGTTGCGATCTTATCCAAGAGATACACTG  238
            |||| || ||||| |||||||| ||||||||  ||||||||||||| |||||||||||||
Sbjct  223  TTTTGAGCAGGATTGAGGAATCGAGAGTCGCCATTGCGATCTTATCGAAGAGATACACTG  282

Query  239  AATCGAGTTGGTGTTTGGATGAATTAGTGAAGATGAAGGAACGGAATGATCAAGACAAGC  298
            ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct  283  AATCGAGTTGGTGTTTGGATGAATTAGTGAAGATGAAGGAACGGATTGACCAAGACGAGC  342

Query  299  TCGTTGTCATTCCCATCTTCTATC-GATTGGATGCTA-ATAACTGTAAAAGACTGGAGGG  356
            ||||||||||||| |||||||| | |||||||||| | | |||||||||||||| |||||
Sbjct  343  TCGTTGTCATTCCAATCTTCTA-CAGATTGGATGCCACA-AACTGTAAAAGACTCGAGGG  400

Query  357  ACCTTTCGGCGATAATTTTCGGAAATTGGAGAGAGAGTATCGGAGTGAGCCTGAGAGGAT  416
            |||||||||||||||||||||||| ||||||||||| ||||| || |||||||| |||||
Sbjct  401  ACCTTTCGGCGATAATTTTCGGAATTTGGAGAGAGACTATCGAAGCGAGCCTGAAAGGAT  460

Query  417  CAAGAAATGGAAAGAAGCTTTGATATATATTCCCCAAAAGATTGGCTTGACTTCGGCAGG  476
            |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct  461  CAAGAAATGGAAAGAAGCTTTGATCTCTATTCCCCAAAAGATTGGCTTAACTTCGGCAGG  520

Query  477  ACATAGG  483
            ||| |||
Sbjct  521  ACACAGG  527


> AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-24052487 
FORWARD LENGTH=1652
Length=1652

 Score =  185 bits (100),  Expect = 4e-46
 Identities = 111/116 (96%), Gaps = 1/116 (1%)
 Strand=Plus/Plus

Query  504   TCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAGGGCCTACCA  563
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  897   TCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCA  956

Query  564   TAAGCAGTTCTCGGTTCCTGAGATCACGACTTCCGTCTTTGAACC-TCCAATATGA  618
             | ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  957   TGAGCAGTTTTCGGTCCCTGAGATCACGACTTCCGTCTTTGAACCCTCCAATATGA  1012



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29788849171


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5