BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356600
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44720.1 | Symbols: | Molybdenum cofactor sulfurase family ... 1435 0.0
> AT5G44720.1 | Symbols: | Molybdenum cofactor sulfurase family
protein | chr5:18042971-18045496 FORWARD LENGTH=1263
Length=1263
Score = 1435 bits (777), Expect = 0.0
Identities = 877/927 (95%), Gaps = 0/927 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGCTCTAAAGATTCAATCTTTGGTCATTTATCCGATCAAATCCTGCCGTGGA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 116 ATGGAGGAAGGTCTAAAGATTCAATCTTTGGTCATTTATCCGATCAAATCTTGCCGTGGA 175
Query 61 ATCTCTGTTCCTCAGGCTACCGTTACTCATACTGGATTTCAGTGGGACCGGTATTGGTTA 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 176 ATCTCTGTTCCTCAGGCTACCGTTACTCATACTGGTTTTCAGTGGGACCGGTATTGGTTA 235
Query 121 GTTGTGAACTATAAAGGAAGAGCATACACTCAAAGAGTTGAGCCAAAGCTTGCTCTCGTT 180
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 236 GTTGTTAACTATAAAGGAAGAGCATACACTCAAAGAGTTGAGCCAACCCTTGCTCTTGTT 295
Query 181 GAGTCAGAGTTGCCTAAGGAAGCTTTCTTGGAAGATTGGGAGCCAAAAAAGGACTCATTT 240
|| || ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 296 GAATCGGAGTTGCCTAAGGAAGCCTTCTTGGAAGATTGGGAGCCAACAAATGACTCATTG 355
Query 241 TTGGTGGTAAGAGCTCCTGGTATGAGTCCGTTGAAGATCCCGTTGACTAAGCCAAGCTCA 300
|||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 356 TTGGTGATAAGAGCTCCTGGTATGAGTCCGTTAAAGATACCGTTGACTAGGCCAAGCTCG 415
Query 301 GTGGCTGAAGGTGTGTCCATGTGGGAATGGTCTGGCTCTGCGTTTGATGAAGGAGAAGAA 360
|| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 GTAGCAGAAGGTGTGTCGATGTGGGAATGGTCTGGCTCTGCTTTTGATGAAGGAGAAGAA 475
Query 361 GCTGCAAAATGGTTTTCAGATTATCTTGGGAAACAAAGCCGTTTGGTTCGGTTTAATAAA 420
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 476 GCTGCGAAATGGTTTTCAGATTATCTTGGAAAACAAAGCCGTTTGGTTCGGTTTAATAAA 535
Query 421 GATACTGAAACTAGACCTTCACCTCCTGAGTTTGCAGCGGGTTACTCTACAACATTTGCG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 GATACTGAAACTAGACCTTCACCTCCTGAGTTTGCAGCGGGTTACTCTACAACATTCATG 595
Query 481 GATATGTTTCCGTTTTTGGTTGCATCGCAGGCTTCTCTAGACCAACTGAATACGCTTTTG 540
|||||||||||||||||||||||||| |||| |||| ||||||| ||||||| ||| ||
Sbjct 596 GATATGTTTCCGTTTTTGGTTGCATCTCAGGGTTCTTTAGACCATTTGAATACCCTTCTG 655
Query 541 CCAGAACCAGTGCCTATAAACCGTTTTAGACCCAACATTCTTGTTGATAATTGTGATCCT 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CCAGAACCGGTGCCTATAAACCGTTTTAGACCCAACATTCTTGTTGATAATTGTGATCCT 715
Query 601 TTTGGTGAAGATCTTTGGGATGAAATCAAGATAAACGATTTAGTCTTCCAAGGAGTTAGG 660
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 716 TTCGGTGAAGATCTTTGGGATGAAATCAAAATAAACGATTTAGTCTTCCAAGGAGTTAGG 775
Query 661 CTATGTAGCCGCTGCAAGGTACCAACTGTGAATCAAGAAACCGGGGTTATGGGTGCAGCA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 CTATGTAGCCGCTGCAAGGTACCAACTGTGAATCAAGAAACCGGGGTTATGGGTAAAGCA 835
Query 721 GAGCCAACTGAAACTCTGATGAAGTTCAGATCAGACAATGTCTTAATGCCAGACAAGAAA 780
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 836 GAACCAACTGAAACTCTGATGAAATTCAGATCAGACAATGTCTTAATGCCTGACAAGAAA 895
Query 781 CCGCGTGGAAAGGTTTTCTTTGGCAAGGAGATGGTTTGGAATTGGAACTTAACCAACACT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CCGCGTGGAAAGGTTTTCTTTGGCAAGGAGATGGTTTGGAATTGGAACTTAACCAACACT 955
Query 841 GAAGGCAAATGCAAGAAGACTATCAAAGTTGGTGATACCATCTCTGTCCTTAGGAAGATC 900
|||||| || | ||||| || ||||||||||||||||||||||| ||| | |||||||||
Sbjct 956 GAAGGCGAAGGAAAGAAAACAATCAAAGTTGGTGATACCATCTCAGTCATAAGGAAGATC 1015
Query 901 CCTTCCAGAGCTGAAGCAGCTGTTTAA 927
|||||||||||||||||||||||||||
Sbjct 1016 CCTTCCAGAGCTGAAGCAGCTGTTTAA 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5