BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356638
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44380.1 | Symbols: | FAD-binding Berberine family protein ... 536 1e-151
AT5G44390.1 | Symbols: | FAD-binding Berberine family protein ... 479 3e-134
> AT5G44380.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17878722-17881440 REVERSE LENGTH=1848
Length=1848
Score = 536 bits (290), Expect = 1e-151
Identities = 360/394 (91%), Gaps = 4/394 (1%)
Strand=Plus/Plus
Query 662 CATTTCTGAATTGGACTCCTTACGGTGGTATGATGGCGAAAATTCCTGAATCTGAGATCC 721
|||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1300 CATTTCTGAACTGGACTCCTTACGGTGGTATGATGTCGAAAATCCCTGAATCTGCGATCC 1359
Query 722 CATTTCCGCATCGAAACGGAACCCTCTTCAAGATTCTTTATCAAACGAACTGGCAAGAGA 781
||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct 1360 CATTTCCGCATAGAAACGGAACCCTCTTCAAGATTCTCTATTACGCGAACTGGCTAGAGA 1419
Query 782 ATGACAAGAGA-CAGAGTAGACACATCAACTGGATCAAAGAGATGTACAGTTACATGGCG 840
||||||||| | | ||||||| | |||||||||||||||||||| |||| ||||||||||
Sbjct 1420 ATGACAAGACATC-GAGTAGAAAAATCAACTGGATCAAAGAGATATACAATTACATGGCG 1478
Query 841 CCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACTTCGGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 CCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATCTAGACTTCGGA 1538
Query 901 CAGAACAAGAACAACTCAAAGGTTAACTTCATAGAAGCTAAAATCTGGGGAGCTAATTAT 960
||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 1539 CAGAACAAGAACAACGCAAAGGTTAACTTCATTGAAGCTAAAATCTGGGGACCTAAGTAC 1598
Query 961 TTCAAAGACAATTTCAACAGACTGGTGA-GAATTAAAACAAAGGTTGATCCAGATAACTT 1019
||||||| |||||| ||||| |||||| || ||||||| |||||||||||||| |||||
Sbjct 1599 TTCAAAGGCAATTTTGACAGATTGGTGAAGA-TTAAAACCAAGGTTGATCCAGAGAACTT 1657
Query 1020 CTTTAGACACGAGCAGAGTATCCCAACTCTGCCC 1053
||| || |||||||||||||||||| || |||||
Sbjct 1658 CTTCAGGCACGAGCAGAGTATCCCACCTATGCCC 1691
Score = 483 bits (261), Expect = 2e-135
Identities = 350/392 (89%), Gaps = 10/392 (3%)
Strand=Plus/Plus
Query 261 CAAGCTTGTTCCTGTTCCTGAA-ACCCTAACCGTCTTCACTGTTACCAAAACATTAGAAC 319
||||||||||||||||||| || || | |||||||||||||| |||||||| |||||||
Sbjct 833 CAAGCTTGTTCCTGTTCCT-AAGACTGTTACCGTCTTCACTGTCACCAAAACGTTAGAAC 891
Query 320 AAGACGCAAGATTGAAGATTATTTCTAAGTGGCAACGAATTGCATCCAAGCTTATTGAAG 379
|||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||
Sbjct 892 AAGACGCAAGATTGAAGACTATTTCTAAGTGGCAACAAATTTCATCCAAGATTATTGAAG 951
Query 380 AGCTACACATCCGAGTGGAACTCAGAGCCA-TTGGAAATAACGGAAACAAGACTGTGACA 438
|| ||||||||||||||| |||||||| || ||||||| | ||||||||||||||||||
Sbjct 952 AGATACACATCCGAGTGGTACTCAGAG-CAGCTGGAAATGATGGAAACAAGACTGTGACA 1010
Query 439 ATGTCCTACAAAGGTCAGTTTCTTGGCAAGAAAGGCATCTTGATGAAGGTTATGAAGAAG 498
||| ||||| |||||||||||||||| ||||||||| |||| ||||||||||| |||||
Sbjct 1011 ATGACCTACCTAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGCTGAAGGTTATGGAGAAG 1070
Query 499 GCTTTTCCAGAGCTAGGGTTGACTCAAGAA-GATTGTATC-GAAATGAGTTGGATTGAAT 556
||||||||||| |||||||| |||||| || ||||||| | |||||||| |||||||||
Sbjct 1071 GCTTTTCCAGAACTAGGGTTAACTCAA-AAGGATTGTA-CTGAAATGAGCTGGATTGAAG 1128
Query 557 CCACCCTTTTCGGTGGTGGATTTCCAACAGGTTCTCCTATTGAAGTTTTGCTTCAAG-TC 615
|| |||||||| ||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1129 CCGCCCTTTTCCATGGTGGATTTCCAACAGGTTCTCCTATTGAAATTTTGCTTCA-GCTC 1187
Query 616 AAGTCTCCTTTAGGAAAAGGTTACTTCAAAGC 647
||||| ||| ||||||||| ||||||||||||
Sbjct 1188 AAGTCGCCTCTAGGAAAAGATTACTTCAAAGC 1219
Score = 383 bits (207), Expect = 2e-105
Identities = 241/258 (93%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1 ATGCCTAAACCGGGATTCATATTTAGGCCGATTCACGAGTCTCAAGTCCAAGCTTCCATC 60
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 321 ATGCCTAAACCGGGATTCATATTCAGACCGATTCACCAGTCTCAAGTCCAAGCTTCCATC 380
Query 61 ATCTGTTCCAAGAAACTCGGTATTCATTTTCGTGTTAGAAGTGGCGGTCACGATTTTGAG 120
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 381 ATTTGTTCAAAGAAACTCGGAATTCATTTTCGTGTTAGAAGTGGCGGTCACGATTTCGAG 440
Query 121 GCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATTACTCGATATGTCGAAATTG 180
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 441 GCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATTACTCGACCTGTCAAAATTG 500
Query 181 AGACAAATCACTGTTGATATTAAAGACAATAGTGCTTGGGTTCAACCTGGTGCCACGCTT 240
| |||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 501 AAACAAATCAATGTTGATATTGAATCCAATAGTGCTTGGGTTCAACCTGGTGCTACGCTT 560
Query 241 GGCGAGCTTTACTACAGA 258
|| |||||||||||||||
Sbjct 561 GGTGAGCTTTACTACAGA 578
> AT5G44390.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17882196-17885004 REVERSE LENGTH=1860
Length=1860
Score = 479 bits (259), Expect = 3e-134
Identities = 368/420 (88%), Gaps = 9/420 (2%)
Strand=Plus/Plus
Query 651 AAG-AGACGCACCATTTCTGAA-TTGGACTCCTTACGGTGGTATGATGGCGAAAATTCCT 708
||| ||||||| | || | || |||||||||||||||||| | ||||| ||||| |||
Sbjct 1318 AAGAAGACGCAGCGTTAGT-AATTTGGACTCCTTACGGTGGAAAGATGGATAAAATCCCT 1376
Query 709 GAATCTGAGATCCCATTTCCGCATCGAAACGGAACCCTCTTCAAGATTCTTTATCAAACG 768
|||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| | | |
Sbjct 1377 GAATCTGAGATCCCATTTCCGCATAGAAACGGAACCAACTTCATGATTCAATATTACAGG 1436
Query 769 AACTGG-CAAGAGAATGACAAGAGA-CAGAGTAGACACATCAACTGGATCAAAGAGATGT 826
| |||| | ||| | ||| || ||| || | |||| || ||| ||||||| |||| |||
Sbjct 1437 AGCTGGTC-AGATAGTGAGAAAAGACCA-AACAGACGCACCAAATGGATCAGAGAGTTGT 1494
Query 827 ACAGTTACATGGCGCCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAG 886
|| | |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ACGGATACATGACGCCTTACGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAG 1554
Query 887 ATCTAGACTTCGGACAGAACAAGAACAACTCAAAGGT-TAACTTCATAGAAGCTAAAATC 945
|||||||| | |||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 1555 ATCTAGACCTGGGACAGAACAAGGACAACTCAAA-GTCTAACTTCATAGAAGCTAAAATA 1613
Query 946 TGGGGAGCTAATTATTTCAAAGACAATTTCAACAGACTGGTGAGAATTAAAACAAAGGTT 1005
|||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 1614 TGGGGAGCTAATTATTTCAAAGACAATTTCAACAGATTGGTGAGGATTAAATCAAAGGTT 1673
Query 1006 GATCCAGATAACTTCTTTAGACACGAGCAGAGTATCCCAACTCTGCCCGTTTGAAGCTAA 1065
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1674 GATCCAGATAACTTCTTCAGACACGAGCAGAGTATCCCAACTCTGCCCGTATGAAGCTAA 1733
Score = 270 bits (146), Expect = 2e-71
Identities = 320/401 (80%), Gaps = 24/401 (6%)
Strand=Plus/Plus
Query 261 CAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTTCACTGTTACCAAAACATTAGAACA 320
||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 857 CAAGCTTGTTCCTGTTCCTGAAACCCTAACCGTCTTCACGGTCACCAAAACATTCGAGCA 916
Query 321 AGAC-GCAAGATTGAAGATTATTTCTAAGTGGCAACGAA-TTGCATCCAAGCTTATTGAA 378
||| | ||| || |||||| |||| ||||||||| ||| |||| ||| ||| ||||
Sbjct 917 AGATAG-AAGTTTCAAGATTCTTTCAAAGTGGCAA-GAAATTGCGGACAATCTTGTTGAT 974
Query 379 GAGCTACA-CATCCGAGTGGAACT-CAGAGCCAT-TGGAAATAACGGAAACAAGACTGTG 435
||||| | | | |||||| || || | || |||||| || | ||||||||| |||
Sbjct 975 GAGCT-CTTCTTACGAGTGTT-CTTCACTGT-ATCTGGAAACAAAGCAAACAAGACAGTG 1031
Query 436 ACAATGTCCTACAAAGGTCAGTTTCTTGGCAAGAAAGGCATCTTGATGAAGGTTATGAAG 495
|| ||| |||||| |||||||||||||||| ||||||||| ||||||| |||| ||||||
Sbjct 1032 ACGATGGCCTACATAGGTCAGTTTCTTGGCGAGAAAGGCACCTTGATGGAGGTAATGAAG 1091
Query 496 AAGGCTTTTCCAGAGCTAGGGTTGACTCAAGAAG-ATTGTATCGAAATGAGTTGGATTGA 554
|||| ||||||||| || ||| | ||||| |||| ||||||| |||||||||||||| ||
Sbjct 1092 AAGGATTTTCCAGAACTTGGGCTAACTCA-GAAGGATTGTATAGAAATGAGTTGGATCGA 1150
Query 555 ATCCACCCTTTTCGG-TGGTGGATTTCCAACAGG---T--TC-TCCTATTGAAGTTT-TG 606
|||| ||| | | |||||| |||||| | || ||||||||| | || ||
Sbjct 1151 TTCCATTATTTACAACTC-TGGATTCCCAACAAACCCTCCTCCTCCTATTGA-GATTCTG 1208
Query 607 CTTCAAGTCAA-GTCTCCTTTAGGAAAAGGTTACTTCAAAG 646
||||||| ||| |||||| | ||||||| |||||||||||
Sbjct 1209 CTTCAAG-CAAAGTCTCCAATCGGAAAAGTTTACTTCAAAG 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5