BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356646

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family | ...   244    3e-64
  AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17...   196    9e-50
  AT4G14250.1 | Symbols:  | structural constituent of ribosome | ...  86.1    2e-16


> AT2G18020.1 | Symbols: EMB2296 | Ribosomal protein L2 family 
| chr2:7837102-7838304 FORWARD LENGTH=970
Length=970

 Score =  244 bits (132),  Expect = 3e-64
 Identities = 157/169 (93%), Gaps = 2/169 (1%)
 Strand=Plus/Plus

Query  147  GCTCAAGGGAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACTCATGGCCTAAGGT  206
            |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  586  GCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGT  645

Query  207  TCGTGGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACAT  266
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  646  TCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACAT  705

Query  267  AGGTCAAGCTAGTACGGTTAGGCGTGATGCATCTCCTAGAACTAGAAGG  315
             ||||| || ||||| ||||||||||||||| ||||| || | ||||||
Sbjct  706  TGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGA-C-AGAAGG  752


> AT4G36130.1 | Symbols:  | Ribosomal protein L2 family | chr4:17097565-17098879 
FORWARD LENGTH=1048
Length=1048

 Score =  196 bits (106),  Expect = 9e-50
 Identities = 137/152 (90%), Gaps = 2/152 (1%)
 Strand=Plus/Plus

Query  147  GCTCAAGGGAGGTAACGCGTACCACAAGTACCGTGTGAAGAGAAACT-CATGGCCTAAGG  205
            ||||||||  |||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct  585  GCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGC-TGGCCTAAGG  643

Query  206  TTCGTGGTGTGGCTATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACA  265
            ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || |
Sbjct  644  TTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACATA  703

Query  266  TAGGTCAAGCTAGTACGGTTAGGCGTGATGCA  297
            | ||||| |||||||| ||| | |||||||||
Sbjct  704  TTGGTCACGCTAGTACTGTTCGTCGTGATGCA  735


> AT4G14250.1 | Symbols:  | structural constituent of ribosome 
| chr4:8208748-8213237 REVERSE LENGTH=2703
Length=2703

 Score = 86.1 bits (46),  Expect = 2e-16
 Identities = 63/70 (90%), Gaps = 5/70 (7%)
 Strand=Plus/Plus

Query  184   AAGAGAAAC-TCATGGCCTAAGGTTCGTGGTGTGGCTATGA--A-CCCAGTGGAGCATCC  239
             ||||||||| |  ||| ||||||||||||||||||||||||  | |||||||||||||||
Sbjct  1237  AAGAGAAACAT-GTGGGCTAAGGTTCGTGGTGTGGCTATGATGAACCCAGTGGAGCATCC  1295

Query  240   TCATGGAGGA  249
             ||||||||||
Sbjct  1296  TCATGGAGGA  1305



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5