BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356649

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50000.1 | Symbols:  | methyltransferases | chr1:18515059-18...   501    2e-141


> AT1G50000.1 | Symbols:  | methyltransferases | chr1:18515059-18517249 
REVERSE LENGTH=1020
Length=1020

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 311/331 (94%), Gaps = 0/331 (0%)
 Strand=Plus/Plus

Query  16   ACTTTGAAGGGTGGTCGAGCAGACTGGCTAATTGAGAAATGTACAGAGCTCGGAGCGAGC  75
            |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  420  ACTTTGAAGGGTGGTCGAGCGGATTGGCTAATTGAGAAATGTACAGAACTCGGAGCGAGC  479

Query  76   AGTGTCACACCACTTTTAACGGAAAGATCATCCATAATCTCTGAAAACCGGGTTGACAGA  135
            |||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct  480  AGTGTCACACCACTTTTAACGGAAAGATCACCCATAATCTCTGAAAACCGGGTCGATAGA  539

Query  136  TTGGAACGTGTTAGTTTTGCCACGGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTG  195
            |||||||| |||||||||||  | ||||||||||||||||||||||||||||||||||||
Sbjct  540  TTGGAACGCGTTAGTTTTGCTGCAGCTAAGCAATGCCAAAGACTTCATCAAATGGTACTG  599

Query  196  AACCCTCCTATCAAATTTGTTACCCTCTTGGATCATATTTTCAAGTCAAAGTTATGTTTG  255
            |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct  600  AACCCTCCAATCAAATTTGGTACCCTCTTGGATCATATTTTGAAGTCAAAGTTATGTTTG  659

Query  256  GTTGCCACAGCTGAAGCTACACCTCTTCTCAATGCAGTTAACTCCTTAGCAAAAGAATCC  315
            ||||| ||||| ||||||| ||||||||| |||||||| ||||||| |||||||||||||
Sbjct  660  GTTGCTACAGCCGAAGCTAAACCTCTTCTTAATGCAGTAAACTCCTCAGCAAAAGAATCC  719

Query  316  AGCGGACTATTAATCGTTGGATCAGAAGGCG  346
            ||||||||||||||||||||| |||||||||
Sbjct  720  AGCGGACTATTAATCGTTGGACCAGAAGGCG  750



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5