BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356670
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44140.1 | Symbols: ATPHB7, PHB7 | prohibitin 7 | chr5:17762... 1317 0.0
AT1G03860.1 | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:97930... 717 0.0
> AT5G44140.1 | Symbols: ATPHB7, PHB7 | prohibitin 7 | chr5:17762491-17763629
FORWARD LENGTH=837
Length=837
Score = 1317 bits (713), Expect = 0.0
Identities = 799/841 (95%), Gaps = 4/841 (0%)
Strand=Plus/Plus
Query 1 ATGAATGTCAAAAAAGTTCCAAACGTTCCTGGATCACCTGGACTCTCTGCCTTGCTTAAG 60
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGAATGTGAAAAAAGTTCCAAACGTTCCTGGATCACCTGCACTCTCTGCCTTGCTTAAG 60
Query 61 CTTGGTGTTATTGGTGGGCTTGGACTCTATTGCATTGGTAGTAGTATGTACAATGTCGAT 120
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTCGGTGTTATTGGTGGACTTGGACTCTATTGCATTGGTAGTAGCATGTACAATGTCGAT 120
Query 121 GGAGGACACCGTGCCATCGTGTTTAACCGGTTTAGCGGTATCAAAGATAAGGTTTATCCA 180
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 121 GGAGGACACCGTGCCATCGTGTTTAACCGGTTTACCGGTATCAAAGATAGGGTTTATCCA 180
Query 181 GAGGGTACACATTTTAAGATACCATTGTTTGAAAGAGCAATTATCTACGATGTTCGTGCT 240
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 181 GAGGGTACTCATTTTAAGATACCATTGTTTGAAAGAGCAATTATCTATGATGTTCGTTCT 240
Query 241 CGACCTTACGTTGAGAATAGCGAAACTGGAAGTCATGATCTTCAAACGGTGACAATTGGG 300
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 241 CGACCTTACGTTGAGAATAGCCAAACTGGAAGTAATGATCTTCAAACGGTGACTATTGGG 300
Query 301 CTTAGGGTTCTTACACGTCCCATGGGAGACCGATTGCCCGAGATTTACAGAACACTCGGT 360
|||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 301 CTTAGGGTACTTACACGTCCTATGGGAGACCGCTTACCCGAGATTTACAGAACACTCGGT 360
Query 361 CAGAATTACGGAGAGCGAGTTCTCCCTTCCATTATCAACGAAACACTGAAAGCAGTAGTG 420
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 CAGAATTATGGAGAGCGAGTTCTTCCTTCCATTATCAATGAAACACTGAAAGCAGTAGTG 420
Query 421 GCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAGAAGCTGTGAGTAGGGAGATACGC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTCAGTACAATGCAAGCCACCTCATTACACAGAGAGAAGCTGTGAGTAGGGAGATACGC 480
Query 481 AATATTGTGACAGAGCGAGCATCTAAATTCAACATTGCTTTAGATGATGTTTCCATCACA 540
|| |||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||
Sbjct 481 AAGATTGTGACAGAGCGAGCAGCTAAATTTAACATTGCTTTAGATGATGTATCTATCACA 540
Query 541 AACCTCAAATTTGGCAAAGAGTTCACTGAAGCAATTGAGAAGAAACAAGTTGCGGCTCAG 600
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 541 AACCTCAAATTTGGCAAAGAGTTTACTGAAGCAATCGAGAAGAAACAAGTTGCGGCTCAG 600
Query 601 GAAGCAGAACGGGCGAAGTTCATAGTCGAAAAGGCCGAGGAAGACAAGAAAAGTGCTGTT 660
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 601 GAAGCAGAACGGGCTAAGTTCATTGTCGAAAAGGCCGAGCAAGACAAGAAAAGTGCTATT 660
Query 661 ATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAGCTCATAGGCCAAGCTATTGCAAACAAT 720
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 661 ATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAACTCATAGGGCAAGCTATTGCGAACAAT 720
Query 721 GAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATAGCTCAGACCATAGCT 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 GAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATTGCTCAGACCATAGCT 780
Query 781 AGATCGGCTAACAAGGTTTACCTAAACTCCAGTGATCTCTTGCTTAATCTCCAAGCAATG 840
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAATCGGCGAACAAGGTTTACCTAAACTCCAGTGATCTCTT----AATCTCCAAGCAATG 836
Query 841 A 841
|
Sbjct 837 A 837
> AT1G03860.1 | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:979308-981885
REVERSE LENGTH=1280
Length=1280
Score = 717 bits (388), Expect = 0.0
Identities = 714/869 (82%), Gaps = 32/869 (4%)
Strand=Plus/Plus
Query 1 ATGAATGTCAAAAAAGTTCCAAACGTTCCTGGATCACCTGGACTCTCTG-CCTTGCTTAA 59
|||| | |||| |||||||| ||| |||||||| | |||| ||||||| |||| |||||
Sbjct 117 ATGAGTTTCAACAAAGTTCCCAACATTCCTGGAGCTCCTGCTCTCTCTGCCCTT-CTTAA 175
Query 60 GCTTGGTGTTATTGGTGGGCTTGGACTCTATTG-CATTGGTAGTAGTATGTACAATGTCG 118
| | | |||||||||||||| || |||| || | || || |||| | ||||||||||
Sbjct 176 GGTCAGCGTTATTGGTGGGCTCGGTGTCTA-TGCCCTTACTAATAGTCTCTACAATGTCG 234
Query 119 ATGGAGGACACCGTGCCATCGTGTTTAACCGGTTTAGC-GGTATCAAAGATAAGGTTTAT 177
|||||||||||||||| || |||| ||||| || | | |||||||| || ||||| ||
Sbjct 235 ATGGAGGACACCGTGCTGTCATGTTCAACCGATTAA-CTGGTATCAAGGAAAAGGTGTAC 293
Query 178 CCAGAGGGTACACATTTTAAGATACCATTGTTTGAAAGAGC-AATTATCTACGATGTTCG 236
||||| || |||||||||| | | |||| ||||||||| || ||| ||||| || |||||
Sbjct 294 CCAGAAGGCACACATTTTATGGTGCCATGGTTTGAAAG-GCCAATCATCTATGACGTTCG 352
Query 237 TGCTCGACCTTACGTTG-AGAATAGCGAA-ACTGGAAGTCATGATCTTCAAACGGTGACA 294
||| ||||||||| ||| ||| ||| | ||||| |||||||||||||| | ||||| |
Sbjct 353 TGCACGACCTTACCTTGTAGAG-AGC-ACCACTGGTAGTCATGATCTTCAGATGGTGAAA 410
Query 295 ATTGGGCTTA-GGGTTCTTACACGTCCCATGGGAGACCGATTGCC-CGAGATTTACAGAA 352
||||| ||| ||||||| |||||||||||||| ||||| ||||| | |||||||| |||
Sbjct 411 ATTGGA-TTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTC-AGATTTACCGAA 468
Query 353 CACTCGGTC-AGAATTAC-G-GAGAGCGAGTTCTCCCTTCCATTATCAACGAAACACTGA 409
| || || | |||| ||| | || || | ||||| |||||||| ||| | ||||| || |
Sbjct 469 CCCTTGG-CGAGAACTACAGCGAAAG-G-GTTCTTCCTTCCATCATCCATGAAACCCTAA 525
Query 410 AAGCAGTAGTGGCTCAGTACAATGCAAGCCAGCTCATTACACAGAGAGAAGCTGTGAGTA 469
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 526 AAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAGCTGTGAGCA 585
Query 470 GGGAGATACGCAATATTGTGACAGAGCGAGCATCTAAATTCAACATTGCT-TTAGATGAT 528
| ||||||||||| ||| |||||||||| || ||||| || |||||||| || ||||||
Sbjct 586 GAGAGATACGCAAGATTCTGACAGAGCGGGCTTCTAACTTTGACATTGCTCTT-GATGAT 644
Query 529 GTTTCCATCACAAAC-CTCAAATTTGGCAAAGAGTTCACTGAAGCAATTGAGA-AGAAAC 586
|| |||||||| | | || | ||| |||||||||||||| | ||| || ||| | ||||
Sbjct 645 GTCTCCATCACGA-CTCTGACATTCGGCAAAGAGTTCACCGCAGCTATCGAGGCA-AAAC 702
Query 587 AAGTTGCGGCTCAGGAAGCAGAACGGGCGAAGTTCATAGTCGA-AAAGGCCGAGGAAGAC 645
||||||| ||||||||||| |||||||| |||||||| || || |||| |||| |||||
Sbjct 703 AAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAG-CCGAACAAGAC 761
Query 646 AAGAAAAGTGCTGTTATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAGCTCATAGGCCAA 705
| || |||||| |||||||| || |||||||||||||| ||||||||||| || || |||
Sbjct 762 AGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAA 821
Query 706 GCTATTGCAAACAATGAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATA 765
|| ||||| |||||| | || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 822 GCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATT 881
Query 766 GCTCAGACCATAGCTAGA-TCGGCTAACAAGGTTTACCTAAACTCCAGTGATCTCTTGCT 824
|| |||||||| || | | || ||||||||||||||||| | ||||| ||||| |||||
Sbjct 882 GCACAGACCATTGC-ACAATCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCT 940
Query 825 TAATCTCCAAGCAATGAACTTGGAGCCTA 853
||| || |||| |||||||||||||||||
Sbjct 941 TAACCTTCAAGAAATGAACTTGGAGCCTA 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5