BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356687
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44000.1 | Symbols: | Glutathione S-transferase family prot... 1229 0.0
> AT5G44000.1 | Symbols: | Glutathione S-transferase family protein
| chr5:17702090-17703963 REVERSE LENGTH=1370
Length=1370
Score = 1229 bits (665), Expect = 0.0
Identities = 763/812 (94%), Gaps = 0/812 (0%)
Strand=Plus/Plus
Query 931 AAGGGTTTAAACGACGCCGTTACAGTCTCAATCGCATCGCCTGGTCAAGATGGATCATGG 990
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 408 AAGGGTTTAAACGACGCCGTTCCGGTCTCAATCGCATCACCTGGTCAAGATGGATCATGG 467
Query 991 GAATTCAAGGATAACAATATCCCAATCAAGGATAAGGATCAACTTATCCCGAGTTTGGAT 1050
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 468 GAATTCAAGAATAATAATATCCCAATCAAGGATAAGGATAAACTTATCCCGAGTTTGGAT 527
Query 1051 AAGGCAAACCGATGCCGGAATCTTAAGGAAGTGTACAAATCAAGAACCGGAGGTTACGAT 1110
|| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 528 AAAGCAAACCGGTGCCGGAATCTTAAGGAAGTGTACAAATCTAGAAGTGGAGGTTACGAT 587
Query 1111 GGGAGGTGTACCGTTCCAATGCTGTGGGATTCAAGGAAGAAAGAAGTTGTTTGTAACGAA 1170
||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 588 GGGAGGTGTACTGTTCCAATGCTGTGGGATTTAAGGAAGAAAGATGTTGTTTGTAACGAA 647
Query 1171 AGCTACGATATTATCGAGTTCTTCAATTCGGGTTTAAACGAATTGGCACGAAACGCTGAT 1230
||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||| | | |
Sbjct 648 AGCTATGATATTATCGAGTTCTTCAATTCAGGTTTAAACAAATTGGCCCGAAATGATAAC 707
Query 1231 TTAGATCTTTCGCCACCAGAGTTGAAAGAGAAGATCCAAGATTGGAATCAGATTGTGTAT 1290
|| ||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 708 TTGGATCTCTCGCCACCAGAGTTGAAAGAGATGATACAAGGTTGGAATCAGATTGTGTAT 767
Query 1291 CCTAAAGTTAACAATGGCGTTTACAGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGAT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CCTAAAGTTAACAATGGCGTTTACAGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGAT 827
Query 1351 GGAGCAGTGAATGAACTCTTTAGTACCTTAGATAAGATTGAGGATCACTTGGGTAGTAAT 1410
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 828 GGAGCAGTGAATGAACTCTTTAGTACCTTAGATGAGATTGAGGATCACTTGGGTAGTAAT 887
Query 1411 AGATACTTGTGTGGAGAAAGGTTAACCTTGGCGGATGTGTGTCTCTTTACAACTCTGATT 1470
||||||||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||
Sbjct 888 AGATACTTGTGTGGAGAAAGGTTGACATTGGCTGATGTATGTCTGTTCACAACTCTGATT 947
Query 1471 CGTTTTGATCCGGTTTACAACAATCTATTCAAGTGCACCAAGAAGAAGCTTGTTGAGTAC 1530
||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 948 CGTTTTGATTCGGTTTACAACATTCTATTCAAATGCACCAAGAAGAAGCTTGTTGAATAC 1007
Query 1531 CCGAATCTCTATGGCTATTTGCGGGACATGTACCAGATTCCTGGTGTTGCGGCTACTTGT 1590
|| |||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1008 CCAAATCTCTATGGCTATTTGCGCGAGATTTACCAGATTCCTGGTGTTGCGGCTACTTGT 1067
Query 1591 GATATTTCGGCTATAATGGATGGGTACTACAAAACGCTGTTTCCGCTAAACGCAAGTGGA 1650
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1068 GATATTTCGGCTATAATGGATGGCTACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGA 1127
Query 1651 ATTCAACCGGCTATTTCTTCATCTGGCGATCAAGAATCTCTCTTGAGACCTCATAACCGA 1710
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1128 ATTCAACCGGCCATTTCTTCATCTGGCGATCAAGATTCTCTCTGGAGACCTCATAACCGA 1187
Query 1711 GACTTGGTGGGTAAAGCCATTGAAGCACAGCT 1742
|||||||| |||||||||||||||||||||||
Sbjct 1188 GACTTGGTAGGTAAAGCCATTGAAGCACAGCT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5