BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356713
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr... 1360 0.0
AT1G04220.1 | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:... 872 0.0
AT1G01120.1 | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:... 283 2e-75
> AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr5:17585763-17588597
FORWARD LENGTH=1841
Length=1841
Score = 1360 bits (736), Expect = 0.0
Identities = 782/805 (97%), Gaps = 0/805 (0%)
Strand=Plus/Plus
Query 9 GGTGCAACCAAACTCCTACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTA 68
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GGTGCAACCAAACTCATACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTA 985
Query 69 CTTAGGCAACGACCGATCAATGCTTCTCTCTAACTGCATCTTCCGTATGGGCGGAGCCGC 128
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 986 CTTAGGCAACGACCGATCAATGCTTCTATCTAACTGTATCTTCCGTATGGGCGGAGCCGC 1045
Query 129 GGTACTTCTCTCGAACCGCTCCTCGGATCGTAGCCGTTCAAAATATCAGCTCATCCACAC 188
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1046 GGTACTTCTCTCGAACCGCTCCTCTGATCGCAGCCGTTCAAAATATCAGCTCATCCATAC 1105
Query 189 CGTTCGTACCCACAAAGGAGCTGATGACAACGCATTCGGCTGTGTTTACCAACGAGAAGA 248
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1106 CGTCCGTACCCACAAAGGAGCTGATGACAACGCATTTGGCTGTGTTTACCAACGAGAAGA 1165
Query 249 CAACAACGCAGAAGAAACCGGCAAAATCGGAGTATCACTCTCTAAAAACCTAATGGCAAT 308
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1166 CAACAACGCAGAAGAAACCGGCAAAATCGGAGTGTCCCTCTCTAAAAACCTAATGGCGAT 1225
Query 309 AGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTCCTACCAATGTC 368
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1226 AGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTTCTACCAATGTC 1285
Query 369 CGAACAACTTCTCTTTTTCGCGACCCTCGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAAT 428
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1286 CGAACAACTTCTCTTTTTCGCGACTCTTGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAAT 1345
Query 429 AAAGCCTTACATTCCCGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGG 488
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 AAAGCCTTACATTCCTGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGG 1405
Query 489 TAGAGCCGTGCTCGACGAGATAGAGAAGAACTTGGATTTATCCGAATGGCATATGGAGCC 548
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1406 TAGAGCCGTGCTCGACGAGATTGAGAAGAACTTGGATTTATCCGAATGGCACATGGAGCC 1465
Query 549 ATCGAGGATGACGTTGAACCGGTTTGGAAACACTTCGAGTAGCTCACTTTGGTATGAGCT 608
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1466 ATCGAGGATGACGTTGAACCGGTTTGGTAACACTTCGAGTAGCTCACTTTGGTATGAGCT 1525
Query 609 TGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCGTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1526 TGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCTTT 1585
Query 669 CGGATCGGGTTTTAAGTGTAACAGTGCGGTTTGGAAAGCTTTGAGAACGATTGATCCAAT 728
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1586 TGGATCGGGTTTTAAGTGTAATAGTGCAGTTTGGAAAGCTTTGAGAACGATTGATCCAAT 1645
Query 729 GGACGAGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTCAAGTTCCTAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 GGACGAGAAGACTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTCAAGTTCCTAG 1705
Query 789 GATCACTCCCATTACGTCGTCGTAG 813
||||||||||||||| |||||||||
Sbjct 1706 GATCACTCCCATTACATCGTCGTAG 1730
> AT1G04220.1 | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119699-1122526
REVERSE LENGTH=1784
Length=1784
Score = 872 bits (472), Expect = 0.0
Identities = 694/800 (87%), Gaps = 19/800 (2%)
Strand=Plus/Plus
Query 9 GGTGCAACCAAACTCCTACGCACTAGTGGTGAGCACAGAGAACATAACCCTAAACTGGTA 68
||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 811 GGTTCAACCAAATTCATATGCACTAGTAGTGAGCACAGAGAACATAACCCTAAACTGGTA 870
Query 69 CTTAGGCAACGACCGATCAATGCTTCTCTCTAACTGCATCTTCCGTATGGGCGGAGCCGC 128
||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 871 TTTAGGCAACGACCGATCAATGCTTCTCTCAAACTGCATCTTCCGAATGGGTGGCGCCGC 930
Query 129 GGTACTTCTCTCGAACCGCTCCTCGGATCG-TAGCCGTTCAAAATATCAGCTCATCCACA 187
|| || ||||| ||||||||||| || || | |||| || ||||| || ||||||||||
Sbjct 931 CGTTCTCCTCTCTAACCGCTCCTCCGACCGCT-GCCGCTCCAAATACCAACTCATCCACA 989
Query 188 CCGTTCGTACCCACAAAGGAGCTGATGACAACGCATTCGGCTGTGTTTACCAACGAGAAG 247
|||| ||||| ||||||||| |||| |||||||| || ||| ||||||||||| ||||
Sbjct 990 CCGTCCGTACACACAAAGGATCTGACGACAACGCCTTTAACTGCGTTTACCAACGCGAAG 1049
Query 248 ACAACAACGCAGAAGAAACCGGCAAAATCGGAGTATCACTCTCTAAAAACCTAATGGCAA 307
||||| ||| | || ||| | ||||||| || ||||| || |||||||||||||| |
Sbjct 1050 ACAACGACG-ACAACAAA----C-AAATCGGTGTCTCACTTTCCAAAAACCTAATGGCTA 1103
Query 308 TAGCTGGAGAAGCTCTCAAGACAAACATCACAACTCTCGGACCACTAGTCCTACCAATGT 367
|||||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||
Sbjct 1104 TAGCTGGAGAAGCTCTCAAGACGAACATAACCACTCTGGGACCGCTAGTTCTACCAATGT 1163
Query 368 CCGAACAACTTCTCTTTTTCGCGACCCTCGTGGCCCGAAAAGTCTTCAAAGTCAAGAAAA 427
| |||||||||||||||||||| || || ||||| ||||||||||| || || |||||||
Sbjct 1164 CTGAACAACTTCTCTTTTTCGCAACACTAGTGGCGCGAAAAGTCTTTAATGTGAAGAAAA 1223
Query 428 TAAAGCCTTACATTCCCGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAG 487
|||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1224 TAAAACCTTATATTCCTGATTTCAAGCTAGCTTTCGAGCACTTCTGCATCCACGCGGGAG 1283
Query 488 GTAGAGCCGTGCTCGACGAGATAGAGAAGAACTTGGATTTATCCGAATGGCATATGGAGC 547
| ||||| |||||||| ||||| |||||||| ||||||||||| || ||||||||||| |
Sbjct 1284 GCAGAGCAGTGCTCGATGAGATTGAGAAGAATTTGGATTTATCTGAGTGGCATATGGAAC 1343
Query 548 CATCGAGGATGACGTTGAACCGGTTTGGAAACACTTCGAGTAGCTCACTTTGGTATGAGC 607
| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1344 CTTCGAGGATGACTTTGAACCGGTTTGGAAATACTTCGAGTAGCTCGCTTTGGTATGAGC 1403
Query 608 TTGCGTATAGTGAAGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCGT 667
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1404 TTGCGTATAGTGAGGCTAAAGGAAGGATTAAGAGAGGAGATAGGACTTGGCAGATTGCTT 1463
Query 668 TCGGATCGGGTTTTAAGTGTAACAGTGCGGTTTGGAAAGCTTTGAGAACGATTGATCC-- 725
| ||||| |||||||||||||| ||||||||||||| |||||||||||| || |||||
Sbjct 1464 TTGGATCCGGTTTTAAGTGTAATAGTGCGGTTTGGAGAGCTTTGAGAACTATCGATCCGT 1523
Query 726 --AATG-GACGA-GAAGA---CTAATCCATGGATTGATGAGATTGATGACTTTCCTGTTC 778
|| | || || ||||| ||||||| ||||||||||||||| |||| ||||| || |
Sbjct 1524 CCAAGGAGAAGAAGAAGAAGACTAATCCTTGGATTGATGAGATTCATGAGTTTCCCGTGC 1583
Query 779 AAGTTCCTAGGATCA-CTCC 797
||||| |||| || ||||
Sbjct 1584 CGGTTCCAAGGA-CATCTCC 1602
> AT1G01120.1 | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167
REVERSE LENGTH=1899
Length=1899
Score = 283 bits (153), Expect = 2e-75
Identities = 520/691 (75%), Gaps = 49/691 (7%)
Strand=Plus/Plus
Query 34 GTGGTGAGCACAGAGAACATAACCCTAAACTGGTACTTAGGCAACGACCGATCAATGCTT 93
||||| ||||| || ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 1033 GTGGTAAGCACGGAAAACATAACCCTAAACTGGTACTTCGGAAATGACCGGTCAATGCTC 1092
Query 94 CTCT-CTAACTGCATCTTCCGTATGGGCGGAGCCGCGGTACTTCTCTCGAACCGCTCCTC 152
|||| | |||||||||||||| ||||||||||| ||| | || ||||| |||||| | ||
Sbjct 1093 CTCTGC-AACTGCATCTTCCGAATGGGCGGAGCTGCGATTCTCCTCTCTAACCGC-CGTC 1150
Query 153 -GGATC-GTAGCCGTTCAAAATA-TCAGCTCATCCACACCGTTCGTACCCACAAAGGAGC 209
|| | | || | ||||| || || ||| || || |||||| || || |||||| |
Sbjct 1151 AAGACCGGAAGAAG-TCAAAGTACTC-GCTGGTCAACGTCGTTCGAACACATAAAGGATC 1208
Query 210 TGATGACAACGCA-TTCGGCTGTGTTTACCAACGAGAAGACAACAACGCAGAAGAAACCG 268
|| ||||| | | | | || || || | | ||||| || ||| || || | |
Sbjct 1209 AGACGACAA-GAACTACAATTGCGTGTA-C--C-AGAAG-GAA-GACG-AG-AG--A--G 1255
Query 269 GCAA-AATCGGAGTATCACTCTCTAAAAACCTAATGGCAATAGCTGGAGAAGCTCTCAAG 327
| || |||||| || || | ||| | | || ||| | | || ||||| ||||| ||
Sbjct 1256 G-AACAATCGGTGTCTCTTTAGCTAGAGAGCTCATGTCTGTCGCCGGAGACGCTCTGAAA 1314
Query 328 ACAAACATCACAACTCTCGGACC-ACTAGTCCTACCAATGTCCGAACAACTT-CTCTTTT 385
||||||||||| ||| | ||||| | | || || ||| |||| || | | || | || |
Sbjct 1315 ACAAACATCACGACTTTAGGACCGA-TGGTTCTTCCATTGTCAGAGC-AGTTGATGTTCT 1372
Query 386 TCGCGACCCTCGTGGCCCGAA--AAG-TCTTCAAAGTCAAGAAAATAAAGCCTTACATTC 442
| | ||| ||| | || ||| | ||| |||| || || |||| || || ||||
Sbjct 1373 T-GATTTCCT--TGGTCAAAAGGAAGATGTTC-AAGTTAA-AAGTTAAA-CCGTATATTC 1426
Query 443 CCGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGGTAGAGCCGTGCTCG 502
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |
Sbjct 1427 CGGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAG 1486
Query 503 ACGA-GATAG-AGAAGAA-CTTGGATTT-ATCCGAATGGCATATGGAGCCATCGAGGATG 558
|||| | | | ||||||| |||| || | | || ||||| ||||| || || || |||
Sbjct 1487 ACGAAG-T-GCAGAAGAATCTTG-ATCTCAAA-GATTGGCACATGGAACCTTCTAGAATG 1542
Query 559 ACGTTGAACCGGTTTGGAAACACTTCGAGTAGCTCACTTTGGTATGAGCTTGCGTATAGT 618
|| ||| || | ||||| ||||||||||||||||| |||||||||||| | || ||||
Sbjct 1543 ACTTTGCACAGATTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACC 1602
Query 619 GAAGCTAAAGGAAGGATTAAGAGA-GGAGATAGGACTT-GGCAGATTGCGTTCGGATCGG 676
|||||||| || || |||| || || || | |||| ||||||||||||| |||||||
Sbjct 1603 GAAGCTAAGGGTCGGGTTAA-AGCTGGTGACCG-ACTTTGGCAGATTGCGTTTGGATCGG 1660
Query 677 GTTTTAAGTGTAACAGTGCGGTTTGGAAAGC 707
|||| |||||||| |||||||||||||||||
Sbjct 1661 GTTTCAAGTGTAATAGTGCGGTTTGGAAAGC 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5