BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356714
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43745.1 | Symbols: | Protein of unknown function (DUF1012)... 1607 0.0
AT5G02940.1 | Symbols: | Protein of unknown function (DUF1012)... 1208 0.0
> AT5G43745.1 | Symbols: | Protein of unknown function (DUF1012)
| chr5:17569147-17574971 REVERSE LENGTH=2759
Length=2759
Score = 1607 bits (870), Expect = 0.0
Identities = 954/996 (96%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 1 ATGGAAACCGACAAACTATTGTTTATCGCACCTCTCAATTGGAAAAAGAAGCAACTATTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 ATGGAAACCGACAAACTATTGTTTATCGCACCTCTCAATTGGAAAAAGAAGCAACTATTA 1535
Query 61 TATGCAGACATGAAACTTGGGAACATTACAGTTGCGACTGATACTCGGAAGCAAGTGTTT 120
||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1536 TATACAGACATGAAACTTGAGAACATTACAGTACCGACTGATACTCGGAAGCAAGTGTTT 1595
Query 121 GAGaaaaaaaGATCACGGCTAGCAAAAATTATAATGCGTCCTCGTAAGTCCTTATTAAAG 180
||||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||
Sbjct 1596 GAGAAAAAAAGATCACGGCTATCGAAGATTATAATGCGTCCTCGTAAGTCCTTATCAAAG 1655
Query 181 GGATCAGATTCCATCAAAGGACCCACAGAATCTATACTTTTACTTGGTTGGCGTGGAGAC 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 GGATCAGATTCCGTCAAAGGACCCACAGAATCTATACTTTTACTTGGTTGGCGTGGAGAC 1715
Query 241 GTTGTGCAAATGATCGAGGAGTTTGATAACTATCTTGGTCCAGGCAGTTCAATGGAAATA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 GTTGTGCAAATGATTGAGGAGTTTGATAACTATCTTGGTCCAGGCAGTTCAATGGAAATA 1775
Query 301 TTATCGGATGTACCGTTAGAGGACAGAAGAAGAGTGGGAGATAGTATGGGTTCAGTGAAA 360
|||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 1776 TTATCGGATGTATCGTTAGAGGACAGAAGAAGGGTGGGTGATAGTATAGGTTCAGTTAAA 1835
Query 361 ATCAAGAACATCCAAGTTTCACATAAGGTTGGGAATCCTCTGAACTATGATACATTAAAG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1836 ATCAAGAACATCCAAGTTTCACATAAGGTTGGGAATCCTCTGAATTATGATACATTAAAG 1895
Query 421 CAAACTATAATCCGTATGAAAAGTAAATATAGAAAGGGCAAAAATATTCCTTTGACCATC 480
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1896 CAAACTATAATGCGTATGAAAAGTAAATATAGAAAAGGCAAAAATATTCCTTTGACCATC 1955
Query 481 CTTGTCATATTGGATCGAGACTGGCTTCTTGGAGATCCATCTAGAGCAGACAAACAATCT 540
|||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1956 CTTGTCATATCGGATCGTGACTGGCTTCTAGGAGATCCATCTAGAGCAGACAAACAATCC 2015
Query 541 GCTTACTCTCTTCTCCTTGCTGAAAGCATCTGCAACCAGCTTGGAGTTAAGGTACATAAT 600
||||||||||||||||| |||||||||||||||||| |||||||||| || || ||||||
Sbjct 2016 GCTTACTCTCTTCTCCTCGCTGAAAGCATCTGCAACAAGCTTGGAGTAAAAGTGCATAAT 2075
Query 601 TTAGCCTCTGAAATCGTCGACTCAAAACTCGGCAAGCAGATAACAGGACTCAAGCCGTCC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 CTAGCCTCTGAAATCGTCGACTCAAAACTCGGCAAGCAGATAACAGGACTCAAGCCGTCC 2135
Query 661 CTAACTTTCATAGCGGCAGAGGAAGTTATGAGCCTTGTAACAGCACAAGTTGCTGAAAAC 720
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2136 CTAACTTTCATAGCAGCAGAGGAAGTTATGAGTCTCGTAACAGCACAAGTTGCTGAAAAC 2195
Query 721 AGCGAACTGAACGAGGTATGGAAGGACATTCTAGACGCAGATGGTGACGAGATATACGTT 780
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2196 AGCGAACTGAACGAGGTGTGGAAGGACATTCTAGACGCAGATGGTGATGAGATATACGTA 2255
Query 781 AAGGACATTGAACTGTACATGAAAGAGGGCGAGAACCATTCATTCACTGAGCTCTCAGAG 840
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2256 AAGGACGTTGAACTGTACATGAAAGAGGGGGAGAACCCTTCATTCACTGAGCTCTCAGAG 2315
Query 841 CGAGCTTGGCTAAGGAGAGAAGTCGCCATAGGCTACATAAAAGGCGGTAAAAAGATAATC 900
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2316 CGAGCTTGGCTAAGGAGAGAAGTCGCCATAGGCTACATTAAAGGCGGTAAAAAGATGATC 2375
Query 901 AATCCGGTTCCAAAGAACGAACCTCTCTCCCTCGAAATGGAAGACTCATTGATTGTTATA 960
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2376 AATCCGGTTCCAAAGAATGAACCTCTCTCCCTCGAAATGGATGACTCATTGATTGTTATA 2435
Query 961 TCAGAGCTTGAAGGAGACCAACCCATCACACTATGA 996
||||||||||||||||||||||| ||||||||||||
Sbjct 2436 TCAGAGCTTGAAGGAGACCAACCAATCACACTATGA 2471
> AT5G02940.1 | Symbols: | Protein of unknown function (DUF1012)
| chr5:684474-689702 REVERSE LENGTH=2667
Length=2667
Score = 1208 bits (654), Expect = 0.0
Identities = 903/1017 (89%), Gaps = 42/1017 (4%)
Strand=Plus/Plus
Query 1 ATGGAAACCGACAAACTATTGTTTATCGCACCTCTCAATTGGAAAAAGAAGCAAC-TATT 59
|||||||| ||||||||||||||||| ||||||||||| | ||| | || | ||
Sbjct 1475 ATGGAAACTGACAAACTATTGTTTATTGCACCTCTCAA---G---AAG--G--ACTTTTT 1524
Query 60 ATATGCAGACATG-AAACTTGGGAACATTACAGT---TGCGAC---TGATACTCGGAAGC 112
|||| |||||||| |||| || |||||| ||||| || ||| ||||||||||||||
Sbjct 1525 ATATACAGACATGAAAAC-TGAGAACATGACAGTAGATGAGACTGATGATACTCGGAAGC 1583
Query 113 AAGTGTTTGA-GaaaaaaaGATCACGGCTAGCAAAA-ATTATAATGCGTCCTCGTAAGTC 170
|||||| ||| |||||||| ||||||||||| |||| ||||||| ||||||| |||||||
Sbjct 1584 AAGTGTATGAGGAAAAAAA-ATCACGGCTAG-AAAAGATTATAACGCGTCCTAGTAAGTC 1641
Query 171 CTTATTAAAGGGATCAGATTCCATCAAAGGACCCACAGAATCTATACTTTTACTTGGTTG 230
||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||
Sbjct 1642 CTTATCAAAGGGATCAGATTCTTTCAAAGGACCCAAAGAATCTATACTTTTGCTTGGTTG 1701
Query 231 GCGTGGAGACGTTGTGCAA-ATGATCGAGGAGTTTGATAACTATCTTGGTCCAGGCAGTT 289
||||||||| |||||| || |||||| |||||||||||| |||||||||||||||||||
Sbjct 1702 GCGTGGAGATGTTGTG-AATATGATCAAGGAGTTTGATAGTTATCTTGGTCCAGGCAGTT 1760
Query 290 CAATGGAAATATTATCGGATGTACCGTTAGAGGACAGAAGAAGAGTGGGA-GATAGTATG 348
|| ||||||||||||| |||||||||||||||||||||||| |||| ||| | |||||
Sbjct 1761 CATTGGAAATATTATCAGATGTACCGTTAGAGGACAGAAGAGGAGT-GGACCAGAGTATA 1819
Query 349 GGTTCAGTG-AAAATCAAGAACATCCAAGTTTCACATAAG-GTTGGGAATCCTCTGAACT 406
| | ||| | ||||||||||||||||||||||||||| || |||||||||| | || | |
Sbjct 1820 GCTACAG-GAAAAATCAAGAACATCCAAGTTTCACAT-AGCGTTGGGAATCATATGGATT 1877
Query 407 ATGATACATTAAAGCAAACTATAATCCGTATG-AAAAGTAAATAT-AGAAAGG-GCAA-A 462
|||||||||||||| ||| |||||| | ||| |||| ||||||| | ||||| | || |
Sbjct 1878 ATGATACATTAAAGGAAAGTATAATGCACATGCAAAA-TAAATATGAAAAAGGTG-AAGA 1935
Query 463 A-ATATTCCTTTGACCATCCTTGTCATATTGGATCGAGACTGGCTTCTTGGAGATCCATC 521
| |||||| | |||| ||| |||| |||| ||||||||||| ||||||||||||||||||
Sbjct 1936 AGATATTCGTCTGACTATCGTTGTAATATCGGATCGAGACTTGCTTCTTGGAGATCCATC 1995
Query 522 TAGAGCAGACAAACAATCTGCTTACT-CTCTTCTCCTTGCTGAAAGCATCTGCAACCAGC 580
|||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||
Sbjct 1996 TAGAGCAGACAAACAATCTGCTTA-TACTCTTCTCCTTGCTGAAACCATCTGCAACAAGC 2054
Query 581 TTGGAGTTAAGGTACATAATTTAGCCTCTGAAATCGTCGACTCAAAACTCGGCAAGCAGA 640
|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 2055 TTGGAGTTAAGGTACATAATCTAGCCTCTGAAATTGTCGACACAAAACTCGGCAAGCAGA 2114
Query 641 TAACAGGACTCAAGCCGTCCCTAACTTTCATAGCGGCAGAGGAAGTTATGAGCCTTGTAA 700
||||| |||||||||||||| | || |||||||| ||||||||||||||||| |||||||
Sbjct 2115 TAACAAGACTCAAGCCGTCCTTGACATTCATAGCAGCAGAGGAAGTTATGAGTCTTGTAA 2174
Query 701 CAGCACAAGTTGCTGAAAACAGCGAACTGAACGAGGTATGGAAGGACATTCTAGACGCAG 760
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||
Sbjct 2175 CAGCACAAGTTGCTGAAAACAGCGAACTAAACGAGGTATGGAAGGACATTTTGGATGCAG 2234
Query 761 ATGGTGACGAGATATACGTTAAGGACATTGAACTGTACATGAAAGAGGGCGAGAACCATT 820
| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2235 AGGGTGATGAGATATACGTAAAGGACATTGAACTGTATATGAAAGAGGGCGAGAACCCTT 2294
Query 821 CATTCACTGAGCTCTCAGAGCGAGCTTGGCTAAGGAGAGAAGTCGCCATAGGCTACATAA 880
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2295 CATTCACGGAGCTTTCAGAGCGAGCTTGGCTAAGGAGAGAAGTTGCCATAGGCTACATAA 2354
Query 881 AAGGCGGTAAAAAGATAATCAATCCGGTTCCAAAGAAC-GAACCTCTCTCCCTCGAAATG 939
||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||||
Sbjct 2355 AAGGCGGTAAAAAGATAATCAATCCGGTTCCAAAG-ACAGAACCTGTTTCCCTCGAAATG 2413
Query 940 GAAGACTCATTGATTGTTATATCAGAGCTTGAAGGAGACCAACCCATCACACTATGA 996
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2414 GAAGACTCATTGATTGTTATATCAGAGCTTGAAGGAGACCAAGTTATCACACTATGA 2470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5