BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356728

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43720.1 | Symbols:  | Protein of unknown function (DUF2361)...   741    0.0  


> AT5G43720.1 | Symbols:  | Protein of unknown function (DUF2361) 
| chr5:17557166-17559354 REVERSE LENGTH=1371
Length=1371

 Score =  741 bits (401),  Expect = 0.0
 Identities = 425/437 (97%), Gaps = 0/437 (0%)
 Strand=Plus/Plus

Query  29    AGACAGGGAGTGAAGACGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAG  88
             |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  667   AGACGGGGAGTGAAGATGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAG  726

Query  89    GGAGTTCAAGCGATGAAGCAGACGCAGATGATGAATTGACCGATAAAAGCGCAAAGGAGG  148
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  727   GGAGTTCAAGCGATGAAGCAGACGCAGATGATGAATTGACTGATAAAAGCGCAAAGGAGG  786

Query  149   CTGCTTCTAGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAAAGGAATCAGA  208
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  787   CTGCTTCTAGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAACGGAATCAGA  846

Query  209   AGCAAAACTCTGATAGGGCTTTAATGCCTCCACCACAAGCAAGGTTTGAATCAAATTATA  268
             |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct  847   AGCAAAACTCTGATAGAGCTTTAATGCCACCACCACAAGCAAGGTTTGAATCAAATTCTA  906

Query  269   GAAAGAATTCATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAA  328
             | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  907   GGAAGAATTTATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAA  966

Query  329   ACAGAAGAAGTGAGTCTTCATATAATGCAAGGGCTGCTGCGGCGAGTTCATATAGCAGTC  388
             ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct  967   ACAGAAGAAGTGAGTCTTCATATAATGCAAGGGCTTCTGCGGCGAATTCATATAGCAGTC  1026

Query  389   AGAGTAGCAACTTGAGCTCCAATTCTGATGCTCATAAACCCAAAAGGAAGAGACGGCCTA  448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1027  AGAGTAGCAACTTGAGCTCCAATTCTGATGCTCATAAACCCAAAAGGAAGAGAAGGCCTA  1086

Query  449   AGAAGAAGAAGCAACAG  465
             |||||||||||||||||
Sbjct  1087  AGAAGAAGAAGCAACAG  1103



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5