BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356742
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43450.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 830 0.0
> AT5G43450.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:17457125-17458797
REVERSE LENGTH=1368
Length=1368
Score = 830 bits (449), Expect = 0.0
Identities = 538/581 (93%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 7 GAAGAAATCGATCGTGTGAACGAACTTACAGA-TTTTATCTCAACAAAGACAGGAGTCAA 65
||| ||||||||||| | ||||| || || || ||||||||| || ||||||||||| ||
Sbjct 99 GAAAAAATCGATCGTTTAAACGATCTCAC-GACTTTTATCTCGACGAAGACAGGAGTGAA 157
Query 66 AGGACTCGTCGATGCCGATATAACCAAAGTTCCTCGAATCTTTCATGTCCCTTCTTCAAC 125
|||||||||||||||||| |||||| |||||||| | || ||||||||||||||||| |
Sbjct 158 AGGACTCGTCGATGCCGAAATAACCGAAGTTCCTAGCATGTTTCATGTCCCTTCTTCTAT 217
Query 126 TTTATCTAACAACAGACCTTCTGATATCACCGGCTTAAACCTTACCGTCCCAATCATCGA 185
|||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 218 TTTATCAAACAACAGACCTTCTGATATCTCCGGCTTAAACCTCACCGTCCCAATCATCGA 277
Query 186 CCTCGGAGATAGTAACACATCTGCAAGAAACGTTGTCGTTTCGAAGATTAAAGACGCAGC 245
|||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 278 CCTCGGAGATCGTAACACATCTTCAAGAAACGTTGTCATTTCGAAGATCAAAGACGCAGC 337
Query 246 TGAGAAGTGGGGATTTTTCCAAGTGATCAATCATGGTGTTCCTTTAACTGTTCTTGAAGA 305
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 338 TGAGAATTGGGGATTTTTCCAAGTGATCAATCATGATGTTCCTTTAACTGTTCTTGAAGA 397
Query 306 GATCAAAGAAAGTGTTCGAAGGTTTCATGAAGAAGATCCAGAGGTCAAGAATCAATATCT 365
||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 398 GATCAAAGAGAGTGTTCGAAGGTTTCATGAACAAGATCCAGTTGTCAAGAACCAATATCT 457
Query 366 TCCTACCGATATCATCAACAAGAGATTTGTTTATAACAATAATTTCGATCTCTACCATTC 425
||||||||||| | ||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 458 TCCTACCGATA--A-CAACAAGAGATTTGTTTATAACAATGATTTCGATCTCTATCATTC 514
Query 426 TTCTCCTATGAATTGGAGAGATTCTTTCACTTGTTATATTGCTCCAGATCCTCCAAATCC 485
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 515 TTCTCCTTTGAATTGGAGAGACTCTTTCACTTGTTATATTGCTCCAGATCCTCCGAATCC 574
Query 486 AGAGGAAATTCCACTAGCTTGCAGGAGTGCGGTGATCGAATACACGAAGCATGTAATGGA 545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AGAGGAAATCCCACTAGCTTGCAGGAGTGCGGTGATCGAATACACGAAGCATGTAATGGA 634
Query 546 ATTGGGAGCT-TGCTCTTCCAACTTCTCTCAGAAGCTCTAG 585
||| |||||| |||||||||||||||||||||||||| |||
Sbjct 635 ATTAGGAGCTGTGCTCTTCCAACTTCTCTCAGAAGCTTTAG 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5