BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356760

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41945.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   191    5e-48


> AT2G41945.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: membrane; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT5G18250.1); Has 57 Blast 
hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:17509069-17512954 REVERSE 
LENGTH=934
Length=934

 Score =  191 bits (103),  Expect = 5e-48
 Identities = 126/136 (93%), Gaps = 6/136 (4%)
 Strand=Plus/Plus

Query  17   GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  504  GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  563

Query  77   GCTTCACATTATGGAATTTTCTATGCTCACCCT-C----CGAAGAAGCTCGTCTCACTCG  131
            ||||||||||||||||||| ||||||| ||||  |    ||||||||||| |||| ||||
Sbjct  564  GCTTCACATTATGGAATTT-CTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCG  622

Query  132  AACTCAGAAAGAAGAG  147
            ||||||||||||||||
Sbjct  623  AACTCAGAAAGAAGAG  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5